Non-Coding RNA Search

Ss1.1-rpldo0112_i15.5

Sequence:


               
               AACAGTCCAGGTTGCCCGACTGGGGGTTTGCGCAGGAGTGAAGAGCCGCCCAAGGCGAAT
TAACTGGTTTCTGATTGGCTGTCCGGAGAAAATGACTGGGCTTCGCGGTCCACCGCCGAG
AGACTAGAGGAGGCGGGGTCGCTGGACTTTGGGCGCGAGCGGTTGAAAGACAGTTGGTGT
CGGTTCGGCTGTCAAAGTCCGGTCCCGCCGCCCAGCCCGGCTCCATGGAGGACCCTGAGG
AGCTGCTGGTTTCTTCGCCTCCCCCGCCGCCTCCCTCCTCTCCCTCTTCAAACTCATCTT
CAGCATCTTCCCCAGGCGTCCCGGGGAGTTTGGGATGGCCGGTTCCAAGCAGGAGCAGCG
GCCGGACAGTGGACCCCCTGGAGGAGGTGGAGCTGCAGATCGGAGACGCAGCATTTTCCT
TAACCAAACTTCTCGAAGCCACATCTGCAGTATCAGCTCAAGTGGAAGAGCTTGCCTTCA
AATGTACAGAAAATGCACGTTTCCTTAAAACATGGCGGGACCTCTTGAGAGAAGGCTATG
ATTCCTTGAAGGCTGACAACTGACTTGCCATGTAATAGTCCATGTGTTCTCACGATATTT
GCAGATGTACCATATGGATAGGATAATCCAGCAGTTCTGTGAAATGAAAATGAAATTTTG
CTTGGTTTTCTTCATTTTGTGAAAATAGAATGTTATTTTTGATGCTGACTAGTATTTATC
TTTAAATACTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGTCCAGGTTGCCCGACTGGGGGTTTGCGCAGGAGTGAAGAGCCGCCCAAGGCGAAT
TAACTGGTTTCTGATTGGCTGTCCGGAGAAAATGACTGGGCTTCGCGGTCCACCGCCGAG
AGACTAGAGGAGGCGGGGTCGCTGGACTTTGGGCGCGAGCGGTTGAAAGACAGTTGGTGT
CGGTTCGGCTGTCAAAGTCCGGTCCCGCCGCCCAGCCCGGCTCCATGGAGGACCCTGAGG
AGCTGCTGGTTTCTTCGCCTCCCCCGCCGCCTCCCTCCTCTCCCTCTTCAAACTCATCTT
CAGCATCTTCCCCAGGCGTCCCGGGGAGTTTGGGATGGCCGGTTCCAAGCAGGAGCAGCG
GCCGGACAGTGGACCCCCTGGAGGAGGTGGAGCTGCAGATCGGAGACGCAGCATTTTCCT
TAACCAAACTTCTCGAAGCCACATCTGCAGTATCAGCTCAAGTGGAAGAGCTTGCCTTCA
AATGTACAGAAAATGCACGTTTCCTTAAAACATGGCGGGACCTCTTGAGAGAAGGCTATG
ATTCCTTGAAGGCTGACAACTGACTTGCCATGTAATAGTCCATGTGTTCTCACGATATTT
GCAGATGTACCATATGGATAGGATAATCCAGCAGTTCTGTGAAATGAAAATGAAATTTTG
CTTGGTTTTCTTCATTTTGTGAAAATAGAATGTTATTTTTGATGCTGACTAGTATTTATC
TTTAAATACTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61839209|ref|XP_593551.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61839209|ref|XP_593551.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-408, gnl|bosTau2|chr17 (21841977-21842375)
               

               
               14-408, gnl|Hg17|chr4 (159950794-159950372)
               

               
               14-408, gnl|Mm7|chr3 (79734000-79734391)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-408, gnl|bosTau2|chr17 (21841977-21842375)
               

               
               14-408, gnl|Hg17|chr4 (159950794-159950372)
               

               
               14-408, gnl|Mm7|chr3 (79734000-79734391)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	14-408, gnl\|bosTau2\|chr17 (21841977-21842375)
	14-408, gnl\|Hg17\|chr4 (159950794-159950372)
	14-408, gnl\|Mm7\|chr3 (79734000-79734391)