Non-Coding RNA Search

Ss1.1-rpldo0112_k17.5

Sequence:


               
               CTCTGACAGGATCCCCTGGCCGGAAGGTCTCCGCGGGTTGATTGGGTTCTAGGGGAGATG
GCGGCAGCCGCAGCGAGTCGAGGTATCCGCGCCAAATTGGGCCTGCGGGAGATTCGCATC
CACTTATGTCAGCGCTCTCCCGGCAGCCAGGGCGTCAGGGACTTCATCGAGAAACGCTAT
GTGGAGCTGAAGAAGGCGAACCCCGACCTGCCCATCCTCATCCGCGAGTGCTCTGATGTG
CAGCCCAAGCTCTGGGCTCGCTACGCATTTGGCCAAGAGAAGAATGTCTCTTTGAACAAC
TTCAGTGCTGATCAGGTAACCAGAACCCTGGAGAATGTGCTAAGTGGCAAAGCCTGAAGC
CTCCACTGAGGATTAAGAGCAAAAGCCCCAGCGCCAGGACTCTGCTGGACTGAGCACAAT
GTGGAGAAACGTGTTCTGTTCTTTATAAAGCTTGTGCTGAAAGTGCCGCCTCCGGATGTT
TTGTTCCTTGTTCCACCCTCTACCCTGTATTGTGTAACCAACTGAGGCAAAGCAGTTAAA
TATAAAAATAAAACTTTATTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGACAGGATCCCCTGGCCGGAAGGTCTCCGCGGGTTGATTGGGTTCTAGGGGAGATG
GCGGCAGCCGCAGCGAGTCGAGGTATCCGCGCCAAATTGGGCCTGCGGGAGATTCGCATC
CACTTATGTCAGCGCTCTCCCGGCAGCCAGGGCGTCAGGGACTTCATCGAGAAACGCTAT
GTGGAGCTGAAGAAGGCGAACCCCGACCTGCCCATCCTCATCCGCGAGTGCTCTGATGTG
CAGCCCAAGCTCTGGGCTCGCTACGCATTTGGCCAAGAGAAGAATGTCTCTTTGAACAAC
TTCAGTGCTGATCAGGTAACCAGAACCCTGGAGAATGTGCTAAGTGGCAAAGCCTGAAGC
CTCCACTGAGGATTAAGAGCAAAAGCCCCAGCGCCAGGACTCTGCTGGACTGAGCACAAT
GTGGAGAAACGTGTTCTGTTCTTTATAAAGCTTGTGCTGAAAGTGCCGCCTCCGGATGTT
TTGTTCCTTGTTCCACCCTCTACCCTGTATTGTGTAACCAACTGAGGCAAAGCAGTTAAA
TATAAAAATAAAACTTTATTCTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|346540|pir||S28249

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|346540|pir||S28249

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               36-564, gnl|bosTau2|chr10 (14357240-14356715)
               

               
               36-564, gnl|Hg17|chr5 (140007363-140005146)
               

               
               36-564, gnl|Mm7|chr18 (37120732-37118574)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-564, gnl|bosTau2|chr10 (14357240-14356715)
               

               
               36-564, gnl|Hg17|chr5 (140007363-140005146)
               

               
               36-564, gnl|Mm7|chr18 (37120732-37118574)

Expressed library(ies): 46 entry(ies)

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Expressed library(ies): 46 entry(ies)

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               cbe (0.956938)
               

               
               che (0.954198)
               

               
               fhi (0.847889)
               

               
               col (0.780031)
               

               
               cje (0.660939)
               

               
               nms (0.641574)
               

               
               hea (0.613497)
               

               
               cly (0.603209)
               

               
               ton (0.526501)
               

               
               rec (0.519211)
               

               
               ece (0.45861)
               

               
               hlv (0.417769)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               sto (0.359648)
               

               
               cut (0.339847)
               

               
               eli (0.303628)
               

               
               isp (0.300752)
               

               
               eje (0.296501)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               che (0.954198)
               

               
               fhi (0.847889)
               

               
               col (0.780031)
               

               
               cje (0.660939)
               

               
               nms (0.641574)
               

               
               hea (0.613497)
               

               
               cly (0.603209)
               

               
               ton (0.526501)
               

               
               rec (0.519211)
               

               
               ece (0.45861)
               

               
               hlv (0.417769)
               

               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               sto (0.359648)
               

               
               cut (0.339847)
               

               
               eli (0.303628)
               

               
               isp (0.300752)
               

               
               eje (0.296501)
               

               
               lnt (0.284616)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	36-564, gnl\|bosTau2\|chr10 (14357240-14356715)
	36-564, gnl\|Hg17\|chr5 (140007363-140005146)
	36-564, gnl\|Mm7\|chr18 (37120732-37118574)

	cbe (0.956938)
	che (0.954198)
	fhi (0.847889)
	col (0.780031)
	cje (0.660939)
	nms (0.641574)
	hea (0.613497)
	cly (0.603209)
	ton (0.526501)
	rec (0.519211)
	ece (0.45861)
	hlv (0.417769)
	elu (0.385356)
	nep (0.36785)
	sto (0.359648)
	cut (0.339847)
	eli (0.303628)
	isp (0.300752)
	eje (0.296501)
	lnt (0.284616)
	cst (0.280073)
	fce (0.271592)
	ssp (0.271039)
	cov (0.264306)
	eep (0.245128)
	med (0.232504)
	ecc (0.23007)
	jej (0.197844)
	fcc (0.197785)
	cmu (0.186393)
	fty (0.17584)
	duo (0.172801)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	bfe (0.149858)
	pty (0.142714)
	ute (0.132784)
	kid (0.129735)
	thg (0.126791)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)
	ldo (0.0970026)