Non-Coding RNA Search

Ss1.1-rpldo0114_c10.5

Sequence:


               
               AAATGTGAGAAGACAATACAGATGAACCAAAGATGTCATGCAGCTGCCATCCACTGCTTT
GGGAAAAAGCTAGCATGCTTCCCTGCTCCCTTCTGTGTTAAGGATGTTTAGGCTCTCCTA
GGAGCAATTAGGGGCCAGAGGCTTGGGCCAATAGGAATTAGACAGTAATGACCTTAGGTA
TCACTAACTCACCAAACAATGCAAAAGAAAAAGGCAGAGGGGGGATCCATCATCTTTCAA
TGATTACATCCATAGCAGTAGTATTGGTGGATTCATTAAGTCAGCTTCTACTTAGCACTA
GAAGAGGGTGCCATACAACTCACATATGTGGAAAAGCACTTTTGATTTGCTTGCCCTGGG
TGTACTGAGCCACATAATAAAGTTCCAAAATGTGCTTGAGATTAAAAAAAAAATTCACTG
AAAATCTCAATATTGCACAGTGCACTTATTCTATAGCCAAAACAGGGCCCCACCAGCCTA
TCTGCACCATTTTCTTTTGGATACCATGGTGAGCGGGTTTTTTTTTTTTTTCTGACTTTG
TATATCCCTAGATGCTAGAACTAAAGGGTTGTAATAAACCAACCAGAAAGAAATCTTCTG
CAGGGTCACTTTTAAAATTACTAGCTTCAGTTGCCACTTGCAAAATAGTCATCGACATCA
ACTGCTCACAGAATATTGACTCTCCTGCTTCTCCCTCATCCCCAAAAGTCTGCAAGTATA
TGAAGCAGTGAGGAATGAAGAGATGCAAACAAGGAGAGAAGTGATGGGAGCGTGTTGTTG
TGTGTTTGTTGTTTTTTTTTCCATTTGCCCGAGCAAAGCAGTGGTTGTAGAAGGAGAGGT
CTTTCATAGTTGTGAACTGCTTTGAGATCATTAGTCAAATTGCATTTTATATACAGAAAA
TATTATGCTAACTGAGAAAATGGGAGGAACAGGGAATGTGCATCTTTATTCTAACCCAGC
AATTAAAAACCTGCCTCTCCGCTTAAGGAATTTTTAGACTTTCGTTCACTGTGATATCCC
AATACCTGGAAGAGTGCTTTGCACAAAGCAGACATTCAATAAATATTTGCTGGGTGAATA
AATCTTATATCAGAGAATCTACAATGCATGCACCAGTCAAAAATTTACCCCAGGAATGGT
CATCACAGCACAGTTTGCTCCAGATTCACCAGGGAGATGAATGAGAGTGTCTGTTAACAA
CTCTCTGTGCTCAAGTCTCTGGTGTTCTCTGAGCCAGGCACCCTCAGCTGGTATCTTACA
TAAGTGAACAAATAGTAATTGCTTAGAAAGGCTTGAGACTTTCTTCACTTCAAGGCAAGG
ATTTCCGGTACAAAAATAAATTCATTCACTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTGAGAAGACAATACAGATGAACCAAAGATGTCATGCAGCTGCCATCCACTGCTTT
GGGAAAAAGCTAGCATGCTTCCCTGCTCCCTTCTGTGTTAAGGATGTTTAGGCTCTCCTA
GGAGCAATTAGGGGCCAGAGGCTTGGGCCAATAGGAATTAGACAGTAATGACCTTAGGTA
TCACTAACTCACCAAACAATGCAAAAGAAAAAGGCAGAGGGGGGATCCATCATCTTTCAA
TGATTACATCCATAGCAGTAGTATTGGTGGATTCATTAAGTCAGCTTCTACTTAGCACTA
GAAGAGGGTGCCATACAACTCACATATGTGGAAAAGCACTTTTGATTTGCTTGCCCTGGG
TGTACTGAGCCACATAATAAAGTTCCAAAATGTGCTTGAGATTAAAAAAAAAATTCACTG
AAAATCTCAATATTGCACAGTGCACTTATTCTATAGCCAAAACAGGGCCCCACCAGCCTA
TCTGCACCATTTTCTTTTGGATACCATGGTGAGCGGGTTTTTTTTTTTTTTCTGACTTTG
TATATCCCTAGATGCTAGAACTAAAGGGTTGTAATAAACCAACCAGAAAGAAATCTTCTG
CAGGGTCACTTTTAAAATTACTAGCTTCAGTTGCCACTTGCAAAATAGTCATCGACATCA
ACTGCTCACAGAATATTGACTCTCCTGCTTCTCCCTCATCCCCAAAAGTCTGCAAGTATA
TGAAGCAGTGAGGAATGAAGAGATGCAAACAAGGAGAGAAGTGATGGGAGCGTGTTGTTG
TGTGTTTGTTGTTTTTTTTTCCATTTGCCCGAGCAAAGCAGTGGTTGTAGAAGGAGAGGT
CTTTCATAGTTGTGAACTGCTTTGAGATCATTAGTCAAATTGCATTTTATATACAGAAAA
TATTATGCTAACTGAGAAAATGGGAGGAACAGGGAATGTGCATCTTTATTCTAACCCAGC
AATTAAAAACCTGCCTCTCCGCTTAAGGAATTTTTAGACTTTCGTTCACTGTGATATCCC
AATACCTGGAAGAGTGCTTTGCACAAAGCAGACATTCAATAAATATTTGCTGGGTGAATA
AATCTTATATCAGAGAATCTACAATGCATGCACCAGTCAAAAATTTACCCCAGGAATGGT
CATCACAGCACAGTTTGCTCCAGATTCACCAGGGAGATGAATGAGAGTGTCTGTTAACAA
CTCTCTGTGCTCAAGTCTCTGGTGTTCTCTGAGCCAGGCACCCTCAGCTGGTATCTTACA
TAAGTGAACAAATAGTAATTGCTTAGAAAGGCTTGAGACTTTCTTCACTTCAAGGCAAGG
ATTTCCGGTACAAAAATAAATTCATTCACTCAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               351-464, - strand, RNAz p=0.951879
               

               
               659-816, - strand, RNAz p=0.79883
               

               
               1138-1256, - strand, RNAz p=0.733073

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               351-464, - strand, RNAz p=0.951879
               

               
               659-816, - strand, RNAz p=0.79883
               

               
               1138-1256, - strand, RNAz p=0.733073

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               362-507, - strand, RNAmicro p=0.999944
               

               
               376-483, + strand, RNAmicro p=0.934898
               

               
               701-832, - strand, RNAmicro p=0.914036

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               362-507, - strand, RNAmicro p=0.999944
               

               
               376-483, + strand, RNAmicro p=0.934898
               

               
               701-832, - strand, RNAmicro p=0.914036

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               6-1356, gnl|bosTau2|chr28 (17026203-17024854)
               

               
               6-1356, gnl|Hg17|chr10 (69640434-69641779)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-1356, gnl|bosTau2|chr28 (17026203-17024854)
               

               
               6-1356, gnl|Hg17|chr10 (69640434-69641779)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               vin (0.997672)
               

               
               sme (0.91631)
               

               
               ldo (0.873024)
               

               
               ssp (0.406559)
               

               
               tbr (0.308356)
               

               
               hea (0.204499)
               

               
               ton (0.1755)
               

               
               isp (0.150376)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.997672)
               

               
               sme (0.91631)
               

               
               ldo (0.873024)
               

               
               ssp (0.406559)
               

               
               tbr (0.308356)
               

               
               hea (0.204499)
               

               
               ton (0.1755)
               

               
               isp (0.150376)

	351-464, - strand, RNAz p=0.951879
	659-816, - strand, RNAz p=0.79883
	1138-1256, - strand, RNAz p=0.733073

	362-507, - strand, RNAmicro p=0.999944
	376-483, + strand, RNAmicro p=0.934898
	701-832, - strand, RNAmicro p=0.914036

	6-1356, gnl\|bosTau2\|chr28 (17026203-17024854)
	6-1356, gnl\|Hg17\|chr10 (69640434-69641779)

	vin (0.997672)
	sme (0.91631)
	ldo (0.873024)
	ssp (0.406559)
	tbr (0.308356)
	hea (0.204499)
	ton (0.1755)
	isp (0.150376)