Non-Coding RNA Search

Ss1.1-rpldo0114_d10.5

Sequence:


               
               AGGGGAAAAGGAACTGGAAAAGGAACAGTCTAGCAGACAAGTGTGCATATTTTAAAATAA
GTAACTTTGGGGCATGTAGGCATTTAGATGATTTTAGTCACACTCAGAATGGGATTCAGA
CTTCAGGTCTGACCTCAAAGACCATGTTTCTACTGAAAAGAGGACATCTTCCCATAGTGT
AAAGGTGGGAGGTTCCAAGCAGCCCTTGACAGAGAAGAAAGTGTCTTCTCTACCACCAGG
GTCCTTCCTGAATCTTCTGCAGAAATTCAGTTCTTGATGTCTGCTGGGTCAGCACGCACA
AGCTCCCCAGCACCCTCCACGCTGTCTTTAACTCTGCTGACTTTCTGACTTGTTTCCTAA
GAGACTTGGAAAACGGGAAGAGATTAGTCACACAGAAGTGTGTATGAAGCCTAAATAACA
TCTAAAAGAAGTTTTTTCAAAATTATAGTAAGGGCTTAACCATAAATAGAAGAGCAGAGT
AATATTTACTTAAAATTTCTTACAGGCATATAAAACTTTGTAAGCGTGTTTATATAGAGA
AGTAACTATCAACCTATAGTATTTATATTTGGGCAAGAAGGGTTAAATCAAATTCTTAAT
TTAAATAAACATAGTTCCTTTAAAGATCAATAGTATTTATACTCTGAAAAGAGTAACAAG
CTTACTTCAGTTATTTATTTGTCCTTTTTTTTCCTTTTGTTTCTCCTTTGGGAAGGAAAC
ACTGTGTCTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGAAAAGGAACTGGAAAAGGAACAGTCTAGCAGACAAGTGTGCATATTTTAAAATAA
GTAACTTTGGGGCATGTAGGCATTTAGATGATTTTAGTCACACTCAGAATGGGATTCAGA
CTTCAGGTCTGACCTCAAAGACCATGTTTCTACTGAAAAGAGGACATCTTCCCATAGTGT
AAAGGTGGGAGGTTCCAAGCAGCCCTTGACAGAGAAGAAAGTGTCTTCTCTACCACCAGG
GTCCTTCCTGAATCTTCTGCAGAAATTCAGTTCTTGATGTCTGCTGGGTCAGCACGCACA
AGCTCCCCAGCACCCTCCACGCTGTCTTTAACTCTGCTGACTTTCTGACTTGTTTCCTAA
GAGACTTGGAAAACGGGAAGAGATTAGTCACACAGAAGTGTGTATGAAGCCTAAATAACA
TCTAAAAGAAGTTTTTTCAAAATTATAGTAAGGGCTTAACCATAAATAGAAGAGCAGAGT
AATATTTACTTAAAATTTCTTACAGGCATATAAAACTTTGTAAGCGTGTTTATATAGAGA
AGTAACTATCAACCTATAGTATTTATATTTGGGCAAGAAGGGTTAAATCAAATTCTTAAT
TTAAATAAACATAGTTCCTTTAAAGATCAATAGTATTTATACTCTGAAAAGAGTAACAAG
CTTACTTCAGTTATTTATTTGTCCTTTTTTTTCCTTTTGTTTCTCCTTTGGGAAGGAAAC
ACTGTGTCTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-240, - strand, RNAz p=0.968385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-240, - strand, RNAz p=0.968385

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-730, gnl|bosTau2|chr10 (36886491-36887200)
               

               
               16-730, gnl|Hg17|chr15 (58575328-58574613)
               

               
               16-730, gnl|Mm7|chr9 (69412716-69413616)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-730, gnl|bosTau2|chr10 (36886491-36887200)
               

               
               16-730, gnl|Hg17|chr15 (58575328-58574613)
               

               
               16-730, gnl|Mm7|chr9 (69412716-69413616)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.194005)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)

	16-730, gnl\|bosTau2\|chr10 (36886491-36887200)
	16-730, gnl\|Hg17\|chr15 (58575328-58574613)
	16-730, gnl\|Mm7\|chr9 (69412716-69413616)