Non-Coding RNA Search

Ss1.1-rpldo0114_j1.5

Sequence:


               
               CTTAACAGGAAAGAGAGTGATTGCCATTGATATTGATCCCGTCAAGATTGATCTGGCTCG
AAATAATGCGGAAGTGTATGGGGTAGCAGACAAGATTGAGTTCATCCAAGGCGATTTCCT
GCAGCTGGCTCCTCGCTTAAAGGCCGACGTCGTGTTCCTCAGCCCGCCCTGGGGAGGCCC
CGACTACGCCACCGCGGAGACCTTCGACATTAGGACCATGATGGCTCCTGATGGCTTTGA
AATTTTCAGACTTTCCCAGATGATCACCAATAATATTGTTTATTTTCTGCCAAGAAATGC
TGATGTCGACCAGGTGGCATCCTTGGCTGGGCCTGGAGGGCAAGTGGAAATAGAACAAAA
CTTTCTTAATAATAAACTGAAGACAATCACTGCGTATTTTGGGGATCTGATCCGCAGGTC
AGCCCCAGAATCGTAACTGTGGTGGTTCAAAGACAAAAAGATCATGTGGGATGAGAACAT
GACTCACCTGAGACACTGCGCTTCTTCTCTGTCCTCGCTGACATTACGTCCCATTCACTC
ACCATCGTGTCCCCATGTGAAACAGAAACGTACAGAAGGTTGATGACTGCTAATGAAGTG
TCCTGAGATCTTTGTGTAATATCCACTATGGGCGTTGGGCCTCAGTCTAGTACGGCAAAG
GCAGGCTTTCCCTGTGCTTTGTGTCAGTCAGTGTATCTGTATTTTTTTTTTTTAATTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAACAGGAAAGAGAGTGATTGCCATTGATATTGATCCCGTCAAGATTGATCTGGCTCG
AAATAATGCGGAAGTGTATGGGGTAGCAGACAAGATTGAGTTCATCCAAGGCGATTTCCT
GCAGCTGGCTCCTCGCTTAAAGGCCGACGTCGTGTTCCTCAGCCCGCCCTGGGGAGGCCC
CGACTACGCCACCGCGGAGACCTTCGACATTAGGACCATGATGGCTCCTGATGGCTTTGA
AATTTTCAGACTTTCCCAGATGATCACCAATAATATTGTTTATTTTCTGCCAAGAAATGC
TGATGTCGACCAGGTGGCATCCTTGGCTGGGCCTGGAGGGCAAGTGGAAATAGAACAAAA
CTTTCTTAATAATAAACTGAAGACAATCACTGCGTATTTTGGGGATCTGATCCGCAGGTC
AGCCCCAGAATCGTAACTGTGGTGGTTCAAAGACAAAAAGATCATGTGGGATGAGAACAT
GACTCACCTGAGACACTGCGCTTCTTCTCTGTCCTCGCTGACATTACGTCCCATTCACTC
ACCATCGTGTCCCCATGTGAAACAGAAACGTACAGAAGGTTGATGACTGCTAATGAAGTG
TCCTGAGATCTTTGTGTAATATCCACTATGGGCGTTGGGCCTCAGTCTAGTACGGCAAAG
GCAGGCTTTCCCTGTGCTTTGTGTCAGTCAGTGTATCTGTATTTTTTTTTTTTAATTTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15080522|gb|AAH11999.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15080522|gb|AAH11999.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               351-459, + strand, RNAz p=0.832448

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               351-459, + strand, RNAz p=0.832448

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               16-234, gnl|bosTau2|chr14 (11864247-11864029)
               

               
               16-234, gnl|Hg17|chr8 (56885992-56886210)
               

               
               16-234, gnl|Mm7|chr4 (3531844-3532062)
               


               
               311-497, gnl|bosTau2|chr14 (11855134-11854945)
               

               
               311-497, gnl|canFam2|chr29 (10284743-10284858)
               

               
               311-497, gnl|danRer3|chr17 (40353080-40352981)
               

               
               311-497, gnl|fr1|chrUn (238139217-238139316)
               

               
               311-497, gnl|galGal2|chr2 (110298583-110298696)
               

               
               311-497, gnl|hg17|chr8 (56899693-56899808)
               

               
               311-497, gnl|Hg17|chr8 (56899691-56899886)
               

               
               311-497, gnl|loxAfr1|scaffold_63748 (3042-3157)
               

               
               311-497, gnl|mm7|chr4 (3542005-3542122)
               

               
               311-497, gnl|Mm7|chr4 (3542003-3542224)
               

               
               311-497, gnl|monDom2|scaffold_4 (108306800-108306685)
               

               
               311-497, gnl|oryCun1|scaffold_178237 (48657-48772)
               

               
               311-497, gnl|panTro1|chr7 (58603911-58604026)
               

               
               311-497, gnl|rheMac2|chr8 (58427753-58427868)
               

               
               311-497, gnl|rn3|chr5 (16850186-16850302)
               

               
               311-497, gnl|tetNig1|chrUn_random (18618295-18618189)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-234, gnl|bosTau2|chr14 (11864247-11864029)
               

               
               16-234, gnl|Hg17|chr8 (56885992-56886210)
               

               
               16-234, gnl|Mm7|chr4 (3531844-3532062)
               


               
               311-497, gnl|bosTau2|chr14 (11855134-11854945)
               

               
               311-497, gnl|canFam2|chr29 (10284743-10284858)
               

               
               311-497, gnl|danRer3|chr17 (40353080-40352981)
               

               
               311-497, gnl|fr1|chrUn (238139217-238139316)
               

               
               311-497, gnl|galGal2|chr2 (110298583-110298696)
               

               
               311-497, gnl|hg17|chr8 (56899693-56899808)
               

               
               311-497, gnl|Hg17|chr8 (56899691-56899886)
               

               
               311-497, gnl|loxAfr1|scaffold_63748 (3042-3157)
               

               
               311-497, gnl|mm7|chr4 (3542005-3542122)
               

               
               311-497, gnl|Mm7|chr4 (3542003-3542224)
               

               
               311-497, gnl|monDom2|scaffold_4 (108306800-108306685)
               

               
               311-497, gnl|oryCun1|scaffold_178237 (48657-48772)
               

               
               311-497, gnl|panTro1|chr7 (58603911-58604026)
               

               
               311-497, gnl|rheMac2|chr8 (58427753-58427868)
               

               
               311-497, gnl|rn3|chr5 (16850186-16850302)
               

               
               311-497, gnl|tetNig1|chrUn_random (18618295-18618189)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               che (0.136314)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               che (0.136314)

	16-234, gnl\|bosTau2\|chr14 (11864247-11864029)
	16-234, gnl\|Hg17\|chr8 (56885992-56886210)
	16-234, gnl\|Mm7\|chr4 (3531844-3532062)

	311-497, gnl\|bosTau2\|chr14 (11855134-11854945)
	311-497, gnl\|canFam2\|chr29 (10284743-10284858)
	311-497, gnl\|danRer3\|chr17 (40353080-40352981)
	311-497, gnl\|fr1\|chrUn (238139217-238139316)
	311-497, gnl\|galGal2\|chr2 (110298583-110298696)
	311-497, gnl\|hg17\|chr8 (56899693-56899808)
	311-497, gnl\|Hg17\|chr8 (56899691-56899886)
	311-497, gnl\|loxAfr1\|scaffold_63748 (3042-3157)
	311-497, gnl\|mm7\|chr4 (3542005-3542122)
	311-497, gnl\|Mm7\|chr4 (3542003-3542224)
	311-497, gnl\|monDom2\|scaffold_4 (108306800-108306685)
	311-497, gnl\|oryCun1\|scaffold_178237 (48657-48772)
	311-497, gnl\|panTro1\|chr7 (58603911-58604026)
	311-497, gnl\|rheMac2\|chr8 (58427753-58427868)
	311-497, gnl\|rn3\|chr5 (16850186-16850302)
	311-497, gnl\|tetNig1\|chrUn_random (18618295-18618189)