Ss1.1-rpldo0114_l12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATATCACCTTTATAGCCAAAGTCAAGGCTGAAGATCTTCTTAGAAAGCCCACTATCAAA TGGTTCAAAGGGAAATGGATGGACCTGGCCAGCAAAGCTGGGAAGCATCTCCAGCTGAAG GAAACCTTTGAAAGGCATTCTCGGGTGTACACATTTGAGATGCAGATCATCAAGGCCAAA GAGAACTATGCAGGAAACTACAGATGCGAGGTCACCTATAAGGATAAGTTTGACAGCTGT TCATTCGATCTCGAAGTACACGAATCTACTGGGACTACTCCAAACATTGACATCAGATCT GCTTTCAAGAGAAGTGGAGACGGTCAAGACGATGCAGGGGAACTTGACTTTAGTGGTCTC CTGAAACGTAGAGAGGTGAAGCAGCAGGAGGAAGAACCTGAGGTTGATGTATGGGAGCTG CTGAAGAATGCGAACCCCAACGAGTACGAGAGGATCGCCTTCCAGTACGGCATCACTGAT CTGCGTGGGATGCTCAAGCGGCTCAAGCGCATGCGCAGAGTGGAGAAGAAGAGCGCTGCT TTTTCAAAAATTCTTGATCCTGCTTATCAGGTTGATAAAGGAGGCAGGGTAAGATTTGCT GTGGAACTGGCAGATCCAAAATTGGAGGTGAAATGGTATAAAAATGGTCAAGAAATTCGA CCCAGTACAAAATACATCTTTGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATATCACCTTTATAGCCAAAGTCAAGGCTGAAGATCTTCTTAGAAAGCCCACTATCAAA TGGTTCAAAGGGAAATGGATGGACCTGGCCAGCAAAGCTGGGAAGCATCTCCAGCTGAAG GAAACCTTTGAAAGGCATTCTCGGGTGTACACATTTGAGATGCAGATCATCAAGGCCAAA GAGAACTATGCAGGAAACTACAGATGCGAGGTCACCTATAAGGATAAGTTTGACAGCTGT TCATTCGATCTCGAAGTACACGAATCTACTGGGACTACTCCAAACATTGACATCAGATCT GCTTTCAAGAGAAGTGGAGACGGTCAAGACGATGCAGGGGAACTTGACTTTAGTGGTCTC CTGAAACGTAGAGAGGTGAAGCAGCAGGAGGAAGAACCTGAGGTTGATGTATGGGAGCTG CTGAAGAATGCGAACCCCAACGAGTACGAGAGGATCGCCTTCCAGTACGGCATCACTGAT CTGCGTGGGATGCTCAAGCGGCTCAAGCGCATGCGCAGAGTGGAGAAGAAGAGCGCTGCT TTTTCAAAAATTCTTGATCCTGCTTATCAGGTTGATAAAGGAGGCAGGGTAAGATTTGCT GTGGAACTGGCAGATCCAAAATTGGAGGTGAAATGGTATAAAAATGGTCAAGAAATTCGA CCCAGTACAAAATACATCTTTGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 557-674, + strand, RNAz p=0.743473 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 557-674, + strand, RNAz p=0.743473 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-146, gnl|bosTau2|chr5 (39794248-39794393) | |
| 1-146, gnl|canFam2|chr15 (43546259-43546414) | |
| 1-146, gnl|danRer3|chr4 (19160311-19160174) | |
| 1-146, gnl|dasNov1|scaffold_58075 (7803-7648) | |
| 1-146, gnl|fr1|chrUn (212005799-212005954) | |
| 1-146, gnl|galGal2|chr1 (52333259-52333104) | |
| 1-146, gnl|hg17|chr12 (100527816-100527971) | |
| 1-146, gnl|Hg17|chr12 (100527822-100527967) | |
| 1-146, gnl|loxAfr1|scaffold_604 (125799-125954) | |
| 1-146, gnl|mm7|chr10 (88128905-88128750) | |
| 1-146, gnl|Mm7|chr10 (88128897-88128752) | |
| 1-146, gnl|monDom2|scaffold_34 (11749907-11749752) | |
| 1-146, gnl|oryCun1|scaffold_203776 (141748-141904) | |
| 1-146, gnl|panTro1|chr10 (102983327-102983482) | |
| 1-146, gnl|rheMac2|chr11 (102821699-102821854) | |
| 1-146, gnl|rn3|chr7 (25285638-25285483) | |
| 1-146, gnl|tetNig1|chr19 (1600135-1600289) | |
| 1-146, gnl|xenTro1|scaffold_230 (340583-340428) | |
| 369-536, gnl|bosTau2|chr5 (39804199-39804366) | |
| 369-536, gnl|canFam2|chr15 (43558032-43558216) | |
| 369-536, gnl|danRer3|chr4 (19153654-19153473) | |
| 369-536, gnl|dasNov1|scaffold_18559 (87093-87283) | |
| 369-536, gnl|echTel1|scaffold_293231 (35192-35376) | |
| 369-536, gnl|fr1|chrUn (212009931-212010114) | |
| 369-536, gnl|galGal2|chr1 (52326063-52325888) | |
| 369-536, gnl|hg17|chr12 (100538659-100538843) | |
| 369-536, gnl|Hg17|chr12 (100538662-100538829) | |
| 369-536, gnl|loxAfr1|scaffold_604 (135633-135817) | |
| 369-536, gnl|mm7|chr10 (88117866-88117682) | |
| 369-536, gnl|Mm7|chr10 (88117861-88117694) | |
| 369-536, gnl|monDom2|scaffold_34 (11735377-11735197) | |
| 369-536, gnl|oryCun1|scaffold_203776 (150909-151093) | |
| 369-536, gnl|panTro1|chr10 (102994301-102994485) | |
| 369-536, gnl|rheMac2|chr11 (102832946-102833130) | |
| 369-536, gnl|rn3|chr7 (25275704-25275520) | |
| 369-536, gnl|tetNig1|chr19 (1602961-1603140) | |
| 369-536, gnl|xenTro1|scaffold_230 (335511-335339) | |
| 538-674, gnl|bosTau2|chr5 (39805889-39806025) | |
| 538-674, gnl|canFam2|chr15 (43560474-43560659) | |
| 538-674, gnl|danRer3|chr4 (19152625-19152441) | |
| 538-674, gnl|dasNov1|scaffold_76331 (2059-1878) | |
| 538-674, gnl|echTel1|scaffold_293231 (36905-37091) | |
| 538-674, gnl|fr1|chrUn (212010152-212010327) | |
| 538-674, gnl|galGal2|chr1 (52324508-52324324) | |
| 538-674, gnl|hg17|chr12 (100540864-100541050) | |
| 538-674, gnl|Hg17|chr12 (100540909-100541045) | |
| 538-674, gnl|loxAfr1|scaffold_604 (137331-137521) | |
| 538-674, gnl|mm7|chr10 (88116223-88116032) | |
| 538-674, gnl|Mm7|chr10 (88116171-88116035) | |
| 538-674, gnl|monDom2|scaffold_34 (11733144-11732962) | |
| 538-674, gnl|oryCun1|scaffold_203776 (152476-152659) | |
| 538-674, gnl|panTro1|chr10 (102996510-102996696) | |
| 538-674, gnl|rheMac2|chr11 (102835160-102835346) | |
| 538-674, gnl|rn3|chr7 (25273991-25273809) | |
| 538-674, gnl|tetNig1|chr19 (1603188-1603362) | |
| 538-674, gnl|xenTro1|scaffold_230 (334565-334375) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-146, gnl|bosTau2|chr5 (39794248-39794393) | |
| 1-146, gnl|canFam2|chr15 (43546259-43546414) | |
| 1-146, gnl|danRer3|chr4 (19160311-19160174) | |
| 1-146, gnl|dasNov1|scaffold_58075 (7803-7648) | |
| 1-146, gnl|fr1|chrUn (212005799-212005954) | |
| 1-146, gnl|galGal2|chr1 (52333259-52333104) | |
| 1-146, gnl|hg17|chr12 (100527816-100527971) | |
| 1-146, gnl|Hg17|chr12 (100527822-100527967) | |
| 1-146, gnl|loxAfr1|scaffold_604 (125799-125954) | |
| 1-146, gnl|mm7|chr10 (88128905-88128750) | |
| 1-146, gnl|Mm7|chr10 (88128897-88128752) | |
| 1-146, gnl|monDom2|scaffold_34 (11749907-11749752) | |
| 1-146, gnl|oryCun1|scaffold_203776 (141748-141904) | |
| 1-146, gnl|panTro1|chr10 (102983327-102983482) | |
| 1-146, gnl|rheMac2|chr11 (102821699-102821854) | |
| 1-146, gnl|rn3|chr7 (25285638-25285483) | |
| 1-146, gnl|tetNig1|chr19 (1600135-1600289) | |
| 1-146, gnl|xenTro1|scaffold_230 (340583-340428) | |
| 369-536, gnl|bosTau2|chr5 (39804199-39804366) | |
| 369-536, gnl|canFam2|chr15 (43558032-43558216) | |
| 369-536, gnl|danRer3|chr4 (19153654-19153473) | |
| 369-536, gnl|dasNov1|scaffold_18559 (87093-87283) | |
| 369-536, gnl|echTel1|scaffold_293231 (35192-35376) | |
| 369-536, gnl|fr1|chrUn (212009931-212010114) | |
| 369-536, gnl|galGal2|chr1 (52326063-52325888) | |
| 369-536, gnl|hg17|chr12 (100538659-100538843) | |
| 369-536, gnl|Hg17|chr12 (100538662-100538829) | |
| 369-536, gnl|loxAfr1|scaffold_604 (135633-135817) | |
| 369-536, gnl|mm7|chr10 (88117866-88117682) | |
| 369-536, gnl|Mm7|chr10 (88117861-88117694) | |
| 369-536, gnl|monDom2|scaffold_34 (11735377-11735197) | |
| 369-536, gnl|oryCun1|scaffold_203776 (150909-151093) | |
| 369-536, gnl|panTro1|chr10 (102994301-102994485) | |
| 369-536, gnl|rheMac2|chr11 (102832946-102833130) | |
| 369-536, gnl|rn3|chr7 (25275704-25275520) | |
| 369-536, gnl|tetNig1|chr19 (1602961-1603140) | |
| 369-536, gnl|xenTro1|scaffold_230 (335511-335339) | |
| 538-674, gnl|bosTau2|chr5 (39805889-39806025) | |
| 538-674, gnl|canFam2|chr15 (43560474-43560659) | |
| 538-674, gnl|danRer3|chr4 (19152625-19152441) | |
| 538-674, gnl|dasNov1|scaffold_76331 (2059-1878) | |
| 538-674, gnl|echTel1|scaffold_293231 (36905-37091) | |
| 538-674, gnl|fr1|chrUn (212010152-212010327) | |
| 538-674, gnl|galGal2|chr1 (52324508-52324324) | |
| 538-674, gnl|hg17|chr12 (100540864-100541050) | |
| 538-674, gnl|Hg17|chr12 (100540909-100541045) | |
| 538-674, gnl|loxAfr1|scaffold_604 (137331-137521) | |
| 538-674, gnl|mm7|chr10 (88116223-88116032) | |
| 538-674, gnl|Mm7|chr10 (88116171-88116035) | |
| 538-674, gnl|monDom2|scaffold_34 (11733144-11732962) | |
| 538-674, gnl|oryCun1|scaffold_203776 (152476-152659) | |
| 538-674, gnl|panTro1|chr10 (102996510-102996696) | |
| 538-674, gnl|rheMac2|chr11 (102835160-102835346) | |
| 538-674, gnl|rn3|chr7 (25273991-25273809) | |
| 538-674, gnl|tetNig1|chr19 (1603188-1603362) | |
| 538-674, gnl|xenTro1|scaffold_230 (334565-334375) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ton (0.1755) | |
| tbr (0.154178) | |
| ese (0.126502) | |
| ldo (0.0970026) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| tbr (0.154178) | |
| ese (0.126502) | |
| ldo (0.0970026) |