Non-Coding RNA Search

Ss1.1-rpldo0114_l5.5

Sequence:


               
               ATATATATATATATATTATATATATAAAAATAAATATATATATTTTATATATATATAAAA
TATATATATTCTTTTTTTAAATTAACATTGCTAATGTTATTGGTGTCTTCACTGGATGTA
TTTGACTGCTGTGGACTTGAGCTGGGAGGAGAACGTCCCTACCCAGATCCCGACAGGGAA
GAGGATGGACCGAGAGACTCCGGCGCCGTCTTTTTGTCCCTCTTAGGGAAGCCGGGGTCC
CCTCCCCTGCCTGGGAATGCGCAAGGCCAGGGCATGGGGGCACATTTGGCCTGCTTCTGG
GAACACCGACAAACCCAGCCCTGGCCCCGAGCCTCTACCCTGAGTCAAACGGATGGAAAG
ACAGACGACAGGGACAGGGGTGAGGACGCTGGCTCCGACCAGGAGTTCGGGGGAGCCTCG
GGACACTGCTGTGCTTTGGGGACCCCCTCCGCGTGCTGCACCGGCATCTTGCCCCCAGGG
GCACTGCCTGGATGATTTGGGAGCCCGGGTGGCCTTCACCCCCTCTCCCCTGCTCCCGAG
ATGCCCGGGGGCCACTGACACGTGGCGGAGACGCGAACAGAGACGGTGGTGGAGGAAGGG
CCGCCCGGTGCCGGCTCGTCCTTTTCGGGAGGGGCCTTCTGCCTTAGCCCTCTCCCAGCT
TCGCTTCCTGGGTGCAGCCCAGGAGGGCCCCATGTCCTCAGACCATTGAAACCACTAGTT
CTCTCCCCCCCCAGGAAACCTGGCTGTGTGCGTGTGAGTGGTTAACCCACCCCTGTCCCC
GACCCTTCCCGCGGCGTAGAGAGACAGGGCTGGGTCCCCGTGCCCACCCTGGAGGCAGAG
GAAAGAGAAGTGTTTTATATGCGATACTTATTTAATATCCCTTTTTAATTAGAAATTAAA
ACAGTTAATTTAATTAAAGAGTAGGGTTTTTTTCAGTATTCTTGGTTAATATTTAATTTC
AACTATTTATGAGATATATCTGTCTTGCTCTCTCTTACTTGTACTGGTCTTTGTGTATAA
ATTCCTGTTTCTAATCTCTCTCTCTCTGATCGGTGACAGTCACTAGCTGGTCCTGAACAG
ATATTTAATTTTGCTAACACTCAACTCTGCCCTCCCCTTTCCCCTGGCTCCCCGCCACAC
ATTCCTTTGAAATAAGGTTTCAATATACATCTACATACTATATATATATTTGGCAACTTG
TGTTTGTGTATATATATATATATATATATATATATGTTTATGTATATATGTGATTCTGAT
AAAATAGACATTGCTATTCTGTTTTTTATATGTAAAGACAAAACCAGAAAAAATAGAGAA
TTCTACATACTAAATCTCTCTCCTTTTTTAATTTTAATATTTGTTATCATTTATTTATTG
GTGCTACTGTTTATCCGTAATAATTGTGGGGGAAAAAGATATTAACATCACATCTTTGTC
TCTAGTGCAGTTTTTCGAGATATTCCGTAGTACATATTTATTTTTAAACAACAACAAAGA
AATACAGCTATATCTTAAAAAAAAAAGCATTTTGTATTAAAGAATTTAATTCTGAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATATATATATATATTATATATATAAAAATAAATATATATATTTTATATATATATAAAA
TATATATATTCTTTTTTTAAATTAACATTGCTAATGTTATTGGTGTCTTCACTGGATGTA
TTTGACTGCTGTGGACTTGAGCTGGGAGGAGAACGTCCCTACCCAGATCCCGACAGGGAA
GAGGATGGACCGAGAGACTCCGGCGCCGTCTTTTTGTCCCTCTTAGGGAAGCCGGGGTCC
CCTCCCCTGCCTGGGAATGCGCAAGGCCAGGGCATGGGGGCACATTTGGCCTGCTTCTGG
GAACACCGACAAACCCAGCCCTGGCCCCGAGCCTCTACCCTGAGTCAAACGGATGGAAAG
ACAGACGACAGGGACAGGGGTGAGGACGCTGGCTCCGACCAGGAGTTCGGGGGAGCCTCG
GGACACTGCTGTGCTTTGGGGACCCCCTCCGCGTGCTGCACCGGCATCTTGCCCCCAGGG
GCACTGCCTGGATGATTTGGGAGCCCGGGTGGCCTTCACCCCCTCTCCCCTGCTCCCGAG
ATGCCCGGGGGCCACTGACACGTGGCGGAGACGCGAACAGAGACGGTGGTGGAGGAAGGG
CCGCCCGGTGCCGGCTCGTCCTTTTCGGGAGGGGCCTTCTGCCTTAGCCCTCTCCCAGCT
TCGCTTCCTGGGTGCAGCCCAGGAGGGCCCCATGTCCTCAGACCATTGAAACCACTAGTT
CTCTCCCCCCCCAGGAAACCTGGCTGTGTGCGTGTGAGTGGTTAACCCACCCCTGTCCCC
GACCCTTCCCGCGGCGTAGAGAGACAGGGCTGGGTCCCCGTGCCCACCCTGGAGGCAGAG
GAAAGAGAAGTGTTTTATATGCGATACTTATTTAATATCCCTTTTTAATTAGAAATTAAA
ACAGTTAATTTAATTAAAGAGTAGGGTTTTTTTCAGTATTCTTGGTTAATATTTAATTTC
AACTATTTATGAGATATATCTGTCTTGCTCTCTCTTACTTGTACTGGTCTTTGTGTATAA
ATTCCTGTTTCTAATCTCTCTCTCTCTGATCGGTGACAGTCACTAGCTGGTCCTGAACAG
ATATTTAATTTTGCTAACACTCAACTCTGCCCTCCCCTTTCCCCTGGCTCCCCGCCACAC
ATTCCTTTGAAATAAGGTTTCAATATACATCTACATACTATATATATATTTGGCAACTTG
TGTTTGTGTATATATATATATATATATATATATATGTTTATGTATATATGTGATTCTGAT
AAAATAGACATTGCTATTCTGTTTTTTATATGTAAAGACAAAACCAGAAAAAATAGAGAA
TTCTACATACTAAATCTCTCTCCTTTTTTAATTTTAATATTTGTTATCATTTATTTATTG
GTGCTACTGTTTATCCGTAATAATTGTGGGGGAAAAAGATATTAACATCACATCTTTGTC
TCTAGTGCAGTTTTTCGAGATATTCCGTAGTACATATTTATTTTTAAACAACAACAAAGA
AATACAGCTATATCTTAAAAAAAAAAGCATTTTGTATTAAAGAATTTAATTCTGAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               159-275, - strand, RNAz p=0.829629
               

               
               588-745, - strand, RNAz p=0.995372

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-275, - strand, RNAz p=0.829629
               

               
               588-745, - strand, RNAz p=0.995372

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               169-306, + strand, RNAmicro p=0.999691

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               169-306, + strand, RNAmicro p=0.999691

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-791, gnl|bosTau2|chr23 (18071910-18071125)
               

               
               1-791, gnl|Hg17|chr6 (43860637-43861416)
               

               
               1-791, gnl|Mm7|chr17 (44147922-44147197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-791, gnl|bosTau2|chr23 (18071910-18071125)
               

               
               1-791, gnl|Hg17|chr6 (43860637-43861416)
               

               
               1-791, gnl|Mm7|chr17 (44147922-44147197)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               lyg (0.798616)
               

               
               kid (0.518941)
               

               
               pro (0.512033)
               

               
               bfe (0.449573)
               

               
               liv (0.438853)
               

               
               hea (0.408998)
               

               
               sug (0.381874)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               cov (0.264306)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.798616)
               

               
               kid (0.518941)
               

               
               pro (0.512033)
               

               
               bfe (0.449573)
               

               
               liv (0.438853)
               

               
               hea (0.408998)
               

               
               sug (0.381874)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               cov (0.264306)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	159-275, - strand, RNAz p=0.829629
	588-745, - strand, RNAz p=0.995372

	1-791, gnl\|bosTau2\|chr23 (18071910-18071125)
	1-791, gnl\|Hg17\|chr6 (43860637-43861416)
	1-791, gnl\|Mm7\|chr17 (44147922-44147197)

	lyg (0.798616)
	kid (0.518941)
	pro (0.512033)
	bfe (0.449573)
	liv (0.438853)
	hea (0.408998)
	sug (0.381874)
	rec (0.346141)
	sme (0.305437)
	isp (0.300752)
	ldo (0.291008)
	spl (0.286369)
	hlv (0.278513)
	ste (0.270416)
	cov (0.264306)
	tra (0.246184)
	cbe (0.239234)
	jca (0.22792)
	cmu (0.186393)
	nep (0.183925)
	sag (0.182715)
	gul (0.177588)
	eye (0.170503)
	fhi (0.169578)
	mga (0.160205)
	fco (0.157208)
	cli (0.152812)
	lun (0.150489)
	ski (0.146735)
	lnt (0.142308)
	csk (0.140746)
	nmm (0.132802)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)