Ss1.1-rpldo0114_o13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGGGAAATCTTGTGTCAGATTTAGCAGGTCTCGGACTTGCAGGCTACGTTGAAGCTTT GGCTTCCAGGTTAGGCCTATCAATTCCTGATCTCACACCAAAGCAAGTTGACATGTGGCA AACACGTGTTAGCACACATTTGGGCAAAGCTGTTGGGGTAACTATTGGCTGCATTCTAGG AATGTTCCCTTTGATTTTCTTTGGAGGAGGTGAAGAAGATGAGAAACTGGAAAAGCAAAA TTAACTCTCTTAGAATACTTATAAAAAGATGTAAACTAATGTACCTCATTAAATATGCTG TCCCAACATATAGGAATTAAGACAGTAACAGTGTATAGATATGGGATCAAATAATTCAGC ATGTGTTATGGAAAACACTAACTTATTGTGGCTTGGTTTTCTTAGGACATCTTTTTAAAA AAACTTTTATGTGAATTGTTGAAATGCTTTTTCATCGGTGGCAGTCAACATTTTACCTTT CCTTTTTCTTTCTTTGGATACCAAAATATTGTTGAAGTATCAGTCATTGATGTACTGTAC TGACTTGGAGTTCGCCTGTTTGTTATTTACCATGTGTTTATGCATGAAAGTGTTTTCTGT TGTTGTTCCCTGTAGTTACATTTGAAACCTGGAGATTTTTTCCAAATTACTAGGATGTTT AATATTAGTTAAAGGTTTATTTTTTTTACTCTCTTTTTGGCAACTTCAGTTTTGTAGTGT TTCATAGTAAACATTTACAATCATATAATTTCAGTTATTTTTAAAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGGGAAATCTTGTGTCAGATTTAGCAGGTCTCGGACTTGCAGGCTACGTTGAAGCTTT GGCTTCCAGGTTAGGCCTATCAATTCCTGATCTCACACCAAAGCAAGTTGACATGTGGCA AACACGTGTTAGCACACATTTGGGCAAAGCTGTTGGGGTAACTATTGGCTGCATTCTAGG AATGTTCCCTTTGATTTTCTTTGGAGGAGGTGAAGAAGATGAGAAACTGGAAAAGCAAAA TTAACTCTCTTAGAATACTTATAAAAAGATGTAAACTAATGTACCTCATTAAATATGCTG TCCCAACATATAGGAATTAAGACAGTAACAGTGTATAGATATGGGATCAAATAATTCAGC ATGTGTTATGGAAAACACTAACTTATTGTGGCTTGGTTTTCTTAGGACATCTTTTTAAAA AAACTTTTATGTGAATTGTTGAAATGCTTTTTCATCGGTGGCAGTCAACATTTTACCTTT CCTTTTTCTTTCTTTGGATACCAAAATATTGTTGAAGTATCAGTCATTGATGTACTGTAC TGACTTGGAGTTCGCCTGTTTGTTATTTACCATGTGTTTATGCATGAAAGTGTTTTCTGT TGTTGTTCCCTGTAGTTACATTTGAAACCTGGAGATTTTTTCCAAATTACTAGGATGTTT AATATTAGTTAAAGGTTTATTTTTTTTACTCTCTTTTTGGCAACTTCAGTTTTGTAGTGT TTCATAGTAAACATTTACAATCATATAATTTCAGTTATTTTTAAAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 36-143, + strand, RNAz p=0.955868 | |
| 36-143, - strand, RNAz p=0.955868 | |
| 36-143, + strand, RNAz p=0.851791 | |
| 36-143, - strand, RNAz p=0.851791 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 36-143, + strand, RNAz p=0.955868 | |
| 36-143, - strand, RNAz p=0.955868 | |
| 36-143, + strand, RNAz p=0.851791 | |
| 36-143, - strand, RNAz p=0.851791 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 36-143, gnl|bosTau2|chr17 (6930644-6930751) | |
| 36-143, gnl|canFam2|chr13 (25472529-25472652) | |
| 36-143, gnl|echTel1|scaffold_309845 (2786-2660) | |
| 36-143, gnl|galGal2|chr2 (145386632-145386497) | |
| 36-143, gnl|hg17|chr8 (125401502-125401633) | |
| 36-143, gnl|Hg17|chr8 (125401614-125401507) | |
| 36-143, gnl|loxAfr1|scaffold_43666 (16406-16535) | |
| 36-143, gnl|mm7|chr15 (58853877-58854007) | |
| 36-143, gnl|Mm7|chr15 (58853988-58853881) | |
| 36-143, gnl|monDom2|scaffold_3 (30131082-30130951) | |
| 36-143, gnl|oryCun1|scaffold_24009 (1880-2011) | |
| 36-143, gnl|panTro1|chr7 (128131154-128131285) | |
| 36-143, gnl|rheMac2|chr8 (126907619-126907750) | |
| 36-143, gnl|rn3|chr7 (95583698-95583828) | |
| 36-143, gnl|tetNig1|chr8 (4985390-4985516) | |
| 364-765, gnl|bosTau2|chr17 (6932305-6932702) | |
| 364-765, gnl|canFam2|chr13 (25465565-25465884) | |
| 364-765, gnl|dasNov1|scaffold_99838 (41015-41328) | |
| 364-765, gnl|echTel1|scaffold_309845 (6236-5901) | |
| 364-765, gnl|galGal2|chr2 (145388845-145388487) | |
| 364-765, gnl|hg17|chr8 (125394860-125395175) | |
| 364-765, gnl|Hg17|chr8 (125395194-125394868) | |
| 364-765, gnl|loxAfr1|scaffold_43666 (9659-9999) | |
| 364-765, gnl|mm7|chr15 (58851145-58851477) | |
| 364-765, gnl|monDom2|scaffold_3 (30132638-30132339) | |
| 364-765, gnl|oryCun1|scaffold_206409 (173495-173824) | |
| 364-765, gnl|panTro1|chr7 (128124445-128124761) | |
| 364-765, gnl|rheMac2|chr8 (126901089-126901408) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-143, gnl|bosTau2|chr17 (6930644-6930751) | |
| 36-143, gnl|canFam2|chr13 (25472529-25472652) | |
| 36-143, gnl|echTel1|scaffold_309845 (2786-2660) | |
| 36-143, gnl|galGal2|chr2 (145386632-145386497) | |
| 36-143, gnl|hg17|chr8 (125401502-125401633) | |
| 36-143, gnl|Hg17|chr8 (125401614-125401507) | |
| 36-143, gnl|loxAfr1|scaffold_43666 (16406-16535) | |
| 36-143, gnl|mm7|chr15 (58853877-58854007) | |
| 36-143, gnl|Mm7|chr15 (58853988-58853881) | |
| 36-143, gnl|monDom2|scaffold_3 (30131082-30130951) | |
| 36-143, gnl|oryCun1|scaffold_24009 (1880-2011) | |
| 36-143, gnl|panTro1|chr7 (128131154-128131285) | |
| 36-143, gnl|rheMac2|chr8 (126907619-126907750) | |
| 36-143, gnl|rn3|chr7 (95583698-95583828) | |
| 36-143, gnl|tetNig1|chr8 (4985390-4985516) | |
| 364-765, gnl|bosTau2|chr17 (6932305-6932702) | |
| 364-765, gnl|canFam2|chr13 (25465565-25465884) | |
| 364-765, gnl|dasNov1|scaffold_99838 (41015-41328) | |
| 364-765, gnl|echTel1|scaffold_309845 (6236-5901) | |
| 364-765, gnl|galGal2|chr2 (145388845-145388487) | |
| 364-765, gnl|hg17|chr8 (125394860-125395175) | |
| 364-765, gnl|Hg17|chr8 (125395194-125394868) | |
| 364-765, gnl|loxAfr1|scaffold_43666 (9659-9999) | |
| 364-765, gnl|mm7|chr15 (58851145-58851477) | |
| 364-765, gnl|monDom2|scaffold_3 (30132638-30132339) | |
| 364-765, gnl|oryCun1|scaffold_206409 (173495-173824) | |
| 364-765, gnl|panTro1|chr7 (128124445-128124761) | |
| 364-765, gnl|rheMac2|chr8 (126901089-126901408) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| ret (0.128733) | |
| ldo (0.0970026) |