Non-Coding RNA Search

Ss1.1-rpldo0114_p11.5

Sequence:


               
               AGCGGCCGTGTTGCCCCAGTCCCTGGCTGCCCCACAGTGCCACACCCTGCTGGCCTCTGA
GGTGGAAGACAGTGAAATGAATTGTTCGCCTTGACACGTTAAGCTGGCAATCTGATAAGG
ACTTGGAAGCTCTTCGCTGTCAGGAAAACCAAGAACTTGAGTTGATGAACTTGTTTTCAA
GTAGCTCATCAACGGGTCCTGAACACACAAGCGCCGAGCAGGAACCTGCAACAACCAGCA
GAAACACAGCGAGGAAAGAAACATCTCGGACTGTCCATCTGCGCCGCCGAGGGGGGTCTT
GCCTCCTCTCTAAATCTTTCCAGCGGTGTCCTCCTGATTCTGTTCACACTTTACCCTGAA
AGCAGGGATTCTTAACCTGATAGAAGTCAGGGCTATCTGTGAACTTGTTGCAGGGAAATA
ACTACGTTTTTATTGATTGAACAGAAATTTTAGCTCTATTCCTGAACCTCAATGCTGGCA
GCGCATCACAACAGTGAAAGCAGTGCCTGCAACTTTCCCACCAATATGGGTCACGGTTAC
TTTTTTTTTATCTTTTTAACGTTATGTTACAGTCATTGTGGGTGTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGGCCGTGTTGCCCCAGTCCCTGGCTGCCCCACAGTGCCACACCCTGCTGGCCTCTGA
GGTGGAAGACAGTGAAATGAATTGTTCGCCTTGACACGTTAAGCTGGCAATCTGATAAGG
ACTTGGAAGCTCTTCGCTGTCAGGAAAACCAAGAACTTGAGTTGATGAACTTGTTTTCAA
GTAGCTCATCAACGGGTCCTGAACACACAAGCGCCGAGCAGGAACCTGCAACAACCAGCA
GAAACACAGCGAGGAAAGAAACATCTCGGACTGTCCATCTGCGCCGCCGAGGGGGGTCTT
GCCTCCTCTCTAAATCTTTCCAGCGGTGTCCTCCTGATTCTGTTCACACTTTACCCTGAA
AGCAGGGATTCTTAACCTGATAGAAGTCAGGGCTATCTGTGAACTTGTTGCAGGGAAATA
ACTACGTTTTTATTGATTGAACAGAAATTTTAGCTCTATTCCTGAACCTCAATGCTGGCA
GCGCATCACAACAGTGAAAGCAGTGCCTGCAACTTTCCCACCAATATGGGTCACGGTTAC
TTTTTTTTTATCTTTTTAACGTTATGTTACAGTCATTGTGGGTGTCTT

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-554, gnl|bosTau2|chr17 (23615283-23614718)
               

               
               11-554, gnl|Hg17|chrX (48097386-48100836)
               


               
               102-488, gnl|bosTau2|chr14 (5490444-5490830)
               

               
               102-488, gnl|Hg17|chrX (48100376-48100770)
               

               
               102-488, gnl|Mm7|chrX (6673976-6673587)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-554, gnl|bosTau2|chr17 (23615283-23614718)
               

               
               11-554, gnl|Hg17|chrX (48097386-48100836)
               


               
               102-488, gnl|bosTau2|chr14 (5490444-5490830)
               

               
               102-488, gnl|Hg17|chrX (48100376-48100770)
               

               
               102-488, gnl|Mm7|chrX (6673976-6673587)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sme (0.305437)
               

               
               cmu (0.186393)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cmu (0.186393)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	11-554, gnl\|bosTau2\|chr17 (23615283-23614718)
	11-554, gnl\|Hg17\|chrX (48097386-48100836)

	102-488, gnl\|bosTau2\|chr14 (5490444-5490830)
	102-488, gnl\|Hg17\|chrX (48100376-48100770)
	102-488, gnl\|Mm7\|chrX (6673976-6673587)

	sme (0.305437)
	cmu (0.186393)
	ste (0.135208)
	pla (0.133672)
	med (0.116252)
	ldo (0.0970026)