Non-Coding RNA Search

Ss1.1-rpldo0115_d12.5

Sequence:


               
               TTATGATTATTTTTTTTATACTCCAGTAGTCTTCTAGATGTGCAAGAATTGAGAATGAAG
GGGAGTGGGCGCAGGTTTGGAAATCAATCCCAAAGAGCCTGAAGTCAATCAAAGGCCGCG
ATGGAATGGTGGCAGGAGGAGCAATGGAACTTCACTTTTATAATGGGATTTTTACTTTTG
CTCTTTTTATAGTATCAGGGAAGCAAACTGCCTTTTACCAGTTAGACGATGCTATTTGAA
TCTAGTTGAACCAGGGAATACAGAGTGAGCAATATGTAGCTTGAATTACATTTAAAAGCA
GATTTTTTTAAAAAAAACAAAACAAAACGGTGAAAGCACTGATTGTCATGTTTAGCAGTC
ACTATGGCCTAGAGAACTTTTTCAAGTAGGAAGGTAATGTTCTTACTCTCTCAAAAATGG
GCATCGAACAATCAATGTAGGAGCGTGGCAGTGGGTAAAATGATGGACAGGCACCAAAGC
TATTTTCTCATCCACCCAGTGGACGAGTGGGACTGTGAAACAAGTGATGTGGAATGAATG
GGTGCAACAGCTGTACAGACAATCAATAACACACACAGTTCTGGAAAGAACACATCACTT
GTGCTTGTTTGATGAGCTTGTCACATTCTAATCCCTCTCCCCATCCTGTTTCAATTTTGG
GAAACTTGTATCTGCTGGTGTCAGCAATTCTGATTCTGAAATAGGATCAGGCTTTTACTA
CAACAGCCTTCTCTTTCTATTTATTGTGTCGACTCGTGGCTTATGATTAAAGGCAGGCAA
AGTTTGCAGACTCTAAACCCTTAAGAACTGTCTTAAGGATGTTTATTTTTTTCCCCTTTT
TAAATAATTTTACACTTTTTAGTATCTATTTCAGAGTCATATTTAAAACTATTTATTAGT
GAATACAGTACATGAGACAACAAGGTTACTGAGATTACAATTCTTCAGTGGTTAATGATA
ATGTGGTTTATACTGTGCCTTAATAGTAATGCTATTTAAGATATTTATTTTTAAGTTTTA
CTATGCTGCACTCTAAAGAAAGGAACTTTAGATGTGACACTGTAAAATTATGTATTCATC
TCATGGCGTAAATTATTTAGTAGGTCTAGATGTAGCATATTAAATATTAACCTATTCAAC
TAAAGATGTTGACTTGGATTTATTTAAATTCATATGTGCACTGTATAAGAGAGTACTCTT
AACATTAACACATTTTAGTTTAGGTTTTTTCTTTTTTTTTTTTTTTTTACAGGCTCTATT
GCTAGTTTCATGCTTCCTTCTCTGTTTTTTGCCTGTGTAGCCCTCATTATTGGTACTTCA
TTAGTTTAACACTCTTCTTATGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATGATTATTTTTTTTATACTCCAGTAGTCTTCTAGATGTGCAAGAATTGAGAATGAAG
GGGAGTGGGCGCAGGTTTGGAAATCAATCCCAAAGAGCCTGAAGTCAATCAAAGGCCGCG
ATGGAATGGTGGCAGGAGGAGCAATGGAACTTCACTTTTATAATGGGATTTTTACTTTTG
CTCTTTTTATAGTATCAGGGAAGCAAACTGCCTTTTACCAGTTAGACGATGCTATTTGAA
TCTAGTTGAACCAGGGAATACAGAGTGAGCAATATGTAGCTTGAATTACATTTAAAAGCA
GATTTTTTTAAAAAAAACAAAACAAAACGGTGAAAGCACTGATTGTCATGTTTAGCAGTC
ACTATGGCCTAGAGAACTTTTTCAAGTAGGAAGGTAATGTTCTTACTCTCTCAAAAATGG
GCATCGAACAATCAATGTAGGAGCGTGGCAGTGGGTAAAATGATGGACAGGCACCAAAGC
TATTTTCTCATCCACCCAGTGGACGAGTGGGACTGTGAAACAAGTGATGTGGAATGAATG
GGTGCAACAGCTGTACAGACAATCAATAACACACACAGTTCTGGAAAGAACACATCACTT
GTGCTTGTTTGATGAGCTTGTCACATTCTAATCCCTCTCCCCATCCTGTTTCAATTTTGG
GAAACTTGTATCTGCTGGTGTCAGCAATTCTGATTCTGAAATAGGATCAGGCTTTTACTA
CAACAGCCTTCTCTTTCTATTTATTGTGTCGACTCGTGGCTTATGATTAAAGGCAGGCAA
AGTTTGCAGACTCTAAACCCTTAAGAACTGTCTTAAGGATGTTTATTTTTTTCCCCTTTT
TAAATAATTTTACACTTTTTAGTATCTATTTCAGAGTCATATTTAAAACTATTTATTAGT
GAATACAGTACATGAGACAACAAGGTTACTGAGATTACAATTCTTCAGTGGTTAATGATA
ATGTGGTTTATACTGTGCCTTAATAGTAATGCTATTTAAGATATTTATTTTTAAGTTTTA
CTATGCTGCACTCTAAAGAAAGGAACTTTAGATGTGACACTGTAAAATTATGTATTCATC
TCATGGCGTAAATTATTTAGTAGGTCTAGATGTAGCATATTAAATATTAACCTATTCAAC
TAAAGATGTTGACTTGGATTTATTTAAATTCATATGTGCACTGTATAAGAGAGTACTCTT
AACATTAACACATTTTAGTTTAGGTTTTTTCTTTTTTTTTTTTTTTTTACAGGCTCTATT
GCTAGTTTCATGCTTCCTTCTCTGTTTTTTGCCTGTGTAGCCCTCATTATTGGTACTTCA
TTAGTTTAACACTCTTCTTATGTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               612-727, - strand, RNAz p=0.632794
               

               
               953-1112, + strand, RNAz p=0.957442

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               612-727, - strand, RNAz p=0.632794
               

               
               953-1112, + strand, RNAz p=0.957442

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1031-1165, - strand, RNAmicro p=0.979694

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1031-1165, - strand, RNAmicro p=0.979694

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_153020, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_153020, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1333, gnl|bosTau2|chr23 (35095967-35094627)
               

               
               1-1333, gnl|Hg17|chr6 (17400463-17401759)
               

               
               1-1333, gnl|Mm7|chr13 (45911550-45912871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1333, gnl|bosTau2|chr23 (35095967-35094627)
               

               
               1-1333, gnl|Hg17|chr6 (17400463-17401759)
               

               
               1-1333, gnl|Mm7|chr13 (45911550-45912871)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               sme (0.91631)
               

               
               tbr (0.770891)
               

               
               ldo (0.679018)
               

               
               ste (0.676041)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               hlv (0.278513)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               pla (0.133672)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.91631)
               

               
               tbr (0.770891)
               

               
               ldo (0.679018)
               

               
               ste (0.676041)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               hlv (0.278513)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               pla (0.133672)

	612-727, - strand, RNAz p=0.632794
	953-1112, + strand, RNAz p=0.957442

	1-1333, gnl\|bosTau2\|chr23 (35095967-35094627)
	1-1333, gnl\|Hg17\|chr6 (17400463-17401759)
	1-1333, gnl\|Mm7\|chr13 (45911550-45912871)

	sme (0.91631)
	tbr (0.770891)
	ldo (0.679018)
	ste (0.676041)
	vin (0.332557)
	bfe (0.299715)
	hlv (0.278513)
	ese (0.253004)
	mas (0.210305)
	isp (0.150376)
	liv (0.146284)
	pla (0.133672)