Non-Coding RNA Search

Ss1.1-rpldo0116_e9.5.5

Sequence:


               
               GTCAGAGCTAGGGACCATGCCGTCCCAAGCTCAAGGATAAAAACCATCAGGCCTAAGCGC
CATCCATATTCCATCTCCAGTCTTTCCTCCACAAATTGGGATTCATCCTACCTGAAAAGC
ACCATCTAAGAGCAAGGGAACAACAAAAAAATCATGCTATCACATAATACCATGGTGAAG
CAGAGGAAACAGCAAGCATCAGCCATCATGAAGGAAATCCATGGAAACGATGTAGATGGC
ATGGACCTGGGCAAAAAAGTCAGCATTCCCAGGGACATCATGTTGGAAGAATTATCCCAC
CTCAGTAACCGTGGTGCCAGACTATTTAAGATGCGACAAAGAAGATCTGACAAATACACA
TTTGAAAATTTCCAGTATGAATCTAAAGCTCAAATAAACCACAATATTGCCATGCAGAAT
GGGAAACTGGATGGGAACAACTTGGAAAGTGGTTCACAACAAGCCCCATTTACTCCTCCC
AACACCCCGGATCCACGAAGTCCCCCAAATCCAGAAAACATTGCACCAGGATATTCTGGA
CCACTGAAGGAAATTCCTCCTGAAAGATTCAACACCACAGCTGTCCCTAAGTACTACCAG
TCACCCTGGGAACAGGCCATTAGCAATGATCCGGAACTTTTAGAGGCTTTATACCCTAAA
CTTTTCAAGCCTGAAGGAAAGGCAGAACTGCCTGATTACAGGAGCTTTAACAGAGTTGCT
ACCCCATTTGGAGGTTTTGAAAAAGCATCAAAAATAGTTAAATTCAAGGTTCCAGATTTT
GAGCTACTACTTCTCACAGATCCCAGGTTCATGGCCTTTGCCAATCCTCTTTCTGGCAGA
CGGTCCTTCAATAGGACTCCTAAGGGATGGATATCTGAGAATATTCCTATAGTGATAACA
ACTGAACCCACAGAGGATACTACCATACCAGAATCAGATGACCTATGAAAAGAAAGTTAT
ATGTGCCATAAAAACCTCTGAATATAAATGCTGCTGTTTTATTATTCTACTTACAGGCCA
AGCCATGTACACACTTCATTAGCAGCAATAATTTAGTGGCAATTTAACAATTTTCCTTTT
ATGGCATTTAATTTCAATCTCAGATCAAATACTAATAAACGATTCAAAATCTTATTTAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGAGCTAGGGACCATGCCGTCCCAAGCTCAAGGATAAAAACCATCAGGCCTAAGCGC
CATCCATATTCCATCTCCAGTCTTTCCTCCACAAATTGGGATTCATCCTACCTGAAAAGC
ACCATCTAAGAGCAAGGGAACAACAAAAAAATCATGCTATCACATAATACCATGGTGAAG
CAGAGGAAACAGCAAGCATCAGCCATCATGAAGGAAATCCATGGAAACGATGTAGATGGC
ATGGACCTGGGCAAAAAAGTCAGCATTCCCAGGGACATCATGTTGGAAGAATTATCCCAC
CTCAGTAACCGTGGTGCCAGACTATTTAAGATGCGACAAAGAAGATCTGACAAATACACA
TTTGAAAATTTCCAGTATGAATCTAAAGCTCAAATAAACCACAATATTGCCATGCAGAAT
GGGAAACTGGATGGGAACAACTTGGAAAGTGGTTCACAACAAGCCCCATTTACTCCTCCC
AACACCCCGGATCCACGAAGTCCCCCAAATCCAGAAAACATTGCACCAGGATATTCTGGA
CCACTGAAGGAAATTCCTCCTGAAAGATTCAACACCACAGCTGTCCCTAAGTACTACCAG
TCACCCTGGGAACAGGCCATTAGCAATGATCCGGAACTTTTAGAGGCTTTATACCCTAAA
CTTTTCAAGCCTGAAGGAAAGGCAGAACTGCCTGATTACAGGAGCTTTAACAGAGTTGCT
ACCCCATTTGGAGGTTTTGAAAAAGCATCAAAAATAGTTAAATTCAAGGTTCCAGATTTT
GAGCTACTACTTCTCACAGATCCCAGGTTCATGGCCTTTGCCAATCCTCTTTCTGGCAGA
CGGTCCTTCAATAGGACTCCTAAGGGATGGATATCTGAGAATATTCCTATAGTGATAACA
ACTGAACCCACAGAGGATACTACCATACCAGAATCAGATGACCTATGAAAAGAAAGTTAT
ATGTGCCATAAAAACCTCTGAATATAAATGCTGCTGTTTTATTATTCTACTTACAGGCCA
AGCCATGTACACACTTCATTAGCAGCAATAATTTAGTGGCAATTTAACAATTTTCCTTTT
ATGGCATTTAATTTCAATCTCAGATCAAATACTAATAAACGATTCAAAATCTTATTTAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5E9V3_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E9V3_BOVIN

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-121, gnl|bosTau2|chr6 (2941732-2941852)
               

               
               1-121, gnl|Hg17|chr4 (120414604-120414738)
               

               
               1-121, gnl|Mm7|chr3 (122873583-122873451)
               


               
               229-398, gnl|bosTau2|chr6 (2958153-2958322)
               

               
               229-398, gnl|Hg17|chr4 (120429629-120429798)
               

               
               229-398, gnl|Mm7|chr3 (122864862-122864693)
               


               
               710-1146, gnl|bosTau2|chr6 (2979727-2980161)
               

               
               710-1146, gnl|Hg17|chr4 (120464720-120465149)
               

               
               710-1146, gnl|Mm7|chr3 (122845250-122844842)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-121, gnl|bosTau2|chr6 (2941732-2941852)
               

               
               1-121, gnl|Hg17|chr4 (120414604-120414738)
               

               
               1-121, gnl|Mm7|chr3 (122873583-122873451)
               


               
               229-398, gnl|bosTau2|chr6 (2958153-2958322)
               

               
               229-398, gnl|Hg17|chr4 (120429629-120429798)
               

               
               229-398, gnl|Mm7|chr3 (122864862-122864693)
               


               
               710-1146, gnl|bosTau2|chr6 (2979727-2980161)
               

               
               710-1146, gnl|Hg17|chr4 (120464720-120465149)
               

               
               710-1146, gnl|Mm7|chr3 (122845250-122844842)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               vin (8.31393)
               

               
               isp (6.91729)
               

               
               ssp (4.74319)
               

               
               hea (3.68098)
               

               
               ldo (3.00708)
               

               
               hlv (2.78513)
               

               
               tbr (2.46685)
               

               
               bfe (1.79829)
               

               
               ste (1.35208)
               

               
               nms (1.28315)
               

               
               gul (1.24312)
               

               
               aor (0.781097)
               

               
               ton (0.526501)
               

               
               mas (0.42061)
               

               
               che (0.408942)
               

               
               ese (0.379507)
               

               
               sme (0.305437)
               

               
               nep (0.183925)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (8.31393)
               

               
               isp (6.91729)
               

               
               ssp (4.74319)
               

               
               hea (3.68098)
               

               
               ldo (3.00708)
               

               
               hlv (2.78513)
               

               
               tbr (2.46685)
               

               
               bfe (1.79829)
               

               
               ste (1.35208)
               

               
               nms (1.28315)
               

               
               gul (1.24312)
               

               
               aor (0.781097)
               

               
               ton (0.526501)
               

               
               mas (0.42061)
               

               
               che (0.408942)
               

               
               ese (0.379507)
               

               
               sme (0.305437)
               

               
               nep (0.183925)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)

	1-121, gnl\|bosTau2\|chr6 (2941732-2941852)
	1-121, gnl\|Hg17\|chr4 (120414604-120414738)
	1-121, gnl\|Mm7\|chr3 (122873583-122873451)

	229-398, gnl\|bosTau2\|chr6 (2958153-2958322)
	229-398, gnl\|Hg17\|chr4 (120429629-120429798)
	229-398, gnl\|Mm7\|chr3 (122864862-122864693)

	710-1146, gnl\|bosTau2\|chr6 (2979727-2980161)
	710-1146, gnl\|Hg17\|chr4 (120464720-120465149)
	710-1146, gnl\|Mm7\|chr3 (122845250-122844842)

	vin (8.31393)
	isp (6.91729)
	ssp (4.74319)
	hea (3.68098)
	ldo (3.00708)
	hlv (2.78513)
	tbr (2.46685)
	bfe (1.79829)
	ste (1.35208)
	nms (1.28315)
	gul (1.24312)
	aor (0.781097)
	ton (0.526501)
	mas (0.42061)
	che (0.408942)
	ese (0.379507)
	sme (0.305437)
	nep (0.183925)
	lyg (0.133103)
	eru (0.120048)