Non-Coding RNA Search

Ss1.1-rpldo0117_i12.5

Sequence:


               
               GGAGCTGGGGAAACAAACGGCTGCTGGAGGAATGCAGTCGAAGGATTGTGTTGCTGCGGC
CGGGCTTCCAGCATTCACTCCTCTCTCATTAGAAGAAATAGGTAGCAGCATCACTCACCA
GTCTTATGCCATGACCTGCTGCTTCCCATCTCCTGGCACGTCCCCGGGAGAAAACGTTTC
GTTGGCTTGTGCACGACTATGTTCATTTCTGCGGTTGATTTAAATCCGATGTCTAGTCAC
CTTCAGCGTGCGTGCGGTCCTGGCTGGAGGAAGCACATGTCTCGAGGAAGAGAAACGGGA
GAATTCTAGAGAAAATGTGTTGATTTTTCAGAGCAATACATCCTTCTTCATGTCGTTGAG
TCTTCCTAGACCTGTAAAAGGCTATTTATCTTTAAAATGTTAGCAAATTTGAAGGCACTC
TACCTTCCTAAGAAATTTAATTTTAAACATTTTTAACACTACTGAGACGATATACGTATG
CACTTAGGAGGTGCTCAATTTTACAAACTGAGAGACAACAGAATTCTAAGAAGTATAGTC
AAAATGTTGCATGCATTGCAGTTATCGGTGTTCAAAGGATTCAGTTTCATTGCTGACGTA
CTTTTCCAACCAAATAAAATCTTGTCAGTGGCTATGTTAATTCCCATGAAAGTTAAGCAA
GATGCTATTAATAACTGCTCTTCTCTTTTTTTTTTTCTCCCAACTTAAATTTTTGTTGAA
TACATTCAGGTAGAGCATAAAGCTTTGTTACATCAACGCTTCTCGATTTTATGCCTTCTG
TGTCTTTCAACAAGTCCTTTTTGTAATTTTATTTGACATTTTAAAGGCTTAGACCTTGTT
GTTGAAGTGTCTGTCTTTTGCAGTCCTTTGTTATTCTGACATAATCTGATGATTTTTTTT
GGCTGTTTTATAATTTATTCTTTATTACTCAGAAGCATGCTTATTTAGGGAAACTACATG
GTCTTTATAAAAATAGTTCTTTAAAAAGAAAATCAGGGGAGGAAAGGTATCTGTTAAATC
TCTGGAAAACATTACACAGAGGAGAGGGAGCTATAATCCTAAGTATCTTCATGATCTGCA
TGGTTTCATCAGGTTCTTTTGACCTTGTCTGCTACTTTTTCAATGCAGAAGAGACAGTTC
CCATGTTAGCACAGGTGCAGACTGAATGCCGAGTCCCCAGTGGTGTTTTTTGCAGAAGTA
TAATACATTGAGACTCCTGGGTGTGACCAATGTGGAACAAAGAAGAAAGCAGAAAGAGAG
CAAATGAAAATTACAACTTGTATATTTATTTTTTACATTTTGCTTTGACTTTTAAATTTA
GGAAGTACGTTTTTACCCAAGAAACATTCAAGTTCCTGTGTCAGTCCCAATACTCACCGC
TCCTTCCTTACCCCATAGCTCTTTACTGCTGGGAAAGCTGATTTTTTTAAAAAAATAAAA
CAAAATATTTAATCTTAAGTGTTTATTTCAAATGTGTAATGCTTTGGAAATAATGGGTAA
CAGATTATAAAGGATATGTTTATAAAGTGAGCATGTTGGTTCCATTTATAAATATATGTA
TGATTTATAAGCTTTTTTAAAACAAAGCTCAAATTGTGGGTATTTTTCTAAAATGTGCAC
AGCTGTATTTTACATGAAAGGCTCTTTCTAATGGGTTGTTATACTGTACTCTACATTTTG
GACAGCACATGAAGTCTGCCAATGTACTTAATAAAACATGACTTTGTTTATTTAAAGTTT
CTTGCTGTGAAAAAGAACTCCCTACCTGTGAGTTCCTTTATTTATAATCCTTGAAACCAA
AATGTATAATGTACAGTTTTCACAACTGTATCTGCTCTAATAAAAAAAAAAAAAGTTGGT
TATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTGGGGAAACAAACGGCTGCTGGAGGAATGCAGTCGAAGGATTGTGTTGCTGCGGC
CGGGCTTCCAGCATTCACTCCTCTCTCATTAGAAGAAATAGGTAGCAGCATCACTCACCA
GTCTTATGCCATGACCTGCTGCTTCCCATCTCCTGGCACGTCCCCGGGAGAAAACGTTTC
GTTGGCTTGTGCACGACTATGTTCATTTCTGCGGTTGATTTAAATCCGATGTCTAGTCAC
CTTCAGCGTGCGTGCGGTCCTGGCTGGAGGAAGCACATGTCTCGAGGAAGAGAAACGGGA
GAATTCTAGAGAAAATGTGTTGATTTTTCAGAGCAATACATCCTTCTTCATGTCGTTGAG
TCTTCCTAGACCTGTAAAAGGCTATTTATCTTTAAAATGTTAGCAAATTTGAAGGCACTC
TACCTTCCTAAGAAATTTAATTTTAAACATTTTTAACACTACTGAGACGATATACGTATG
CACTTAGGAGGTGCTCAATTTTACAAACTGAGAGACAACAGAATTCTAAGAAGTATAGTC
AAAATGTTGCATGCATTGCAGTTATCGGTGTTCAAAGGATTCAGTTTCATTGCTGACGTA
CTTTTCCAACCAAATAAAATCTTGTCAGTGGCTATGTTAATTCCCATGAAAGTTAAGCAA
GATGCTATTAATAACTGCTCTTCTCTTTTTTTTTTTCTCCCAACTTAAATTTTTGTTGAA
TACATTCAGGTAGAGCATAAAGCTTTGTTACATCAACGCTTCTCGATTTTATGCCTTCTG
TGTCTTTCAACAAGTCCTTTTTGTAATTTTATTTGACATTTTAAAGGCTTAGACCTTGTT
GTTGAAGTGTCTGTCTTTTGCAGTCCTTTGTTATTCTGACATAATCTGATGATTTTTTTT
GGCTGTTTTATAATTTATTCTTTATTACTCAGAAGCATGCTTATTTAGGGAAACTACATG
GTCTTTATAAAAATAGTTCTTTAAAAAGAAAATCAGGGGAGGAAAGGTATCTGTTAAATC
TCTGGAAAACATTACACAGAGGAGAGGGAGCTATAATCCTAAGTATCTTCATGATCTGCA
TGGTTTCATCAGGTTCTTTTGACCTTGTCTGCTACTTTTTCAATGCAGAAGAGACAGTTC
CCATGTTAGCACAGGTGCAGACTGAATGCCGAGTCCCCAGTGGTGTTTTTTGCAGAAGTA
TAATACATTGAGACTCCTGGGTGTGACCAATGTGGAACAAAGAAGAAAGCAGAAAGAGAG
CAAATGAAAATTACAACTTGTATATTTATTTTTTACATTTTGCTTTGACTTTTAAATTTA
GGAAGTACGTTTTTACCCAAGAAACATTCAAGTTCCTGTGTCAGTCCCAATACTCACCGC
TCCTTCCTTACCCCATAGCTCTTTACTGCTGGGAAAGCTGATTTTTTTAAAAAAATAAAA
CAAAATATTTAATCTTAAGTGTTTATTTCAAATGTGTAATGCTTTGGAAATAATGGGTAA
CAGATTATAAAGGATATGTTTATAAAGTGAGCATGTTGGTTCCATTTATAAATATATGTA
TGATTTATAAGCTTTTTTAAAACAAAGCTCAAATTGTGGGTATTTTTCTAAAATGTGCAC
AGCTGTATTTTACATGAAAGGCTCTTTCTAATGGGTTGTTATACTGTACTCTACATTTTG
GACAGCACATGAAGTCTGCCAATGTACTTAATAAAACATGACTTTGTTTATTTAAAGTTT
CTTGCTGTGAAAAAGAACTCCCTACCTGTGAGTTCCTTTATTTATAATCCTTGAAACCAA
AATGTATAATGTACAGTTTTCACAACTGTATCTGCTCTAATAAAAAAAAAAAAAGTTGGT
TATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61861536|ref|XP_588847.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61861536|ref|XP_588847.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1471-1589, - strand, RNAz p=0.633845

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1471-1589, - strand, RNAz p=0.633845

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1870, gnl|bosTau2|chr14 (21395097-21393243)
               

               
               1-1870, gnl|Hg17|chr8 (75311395-75309489)
               

               
               1-1870, gnl|Mm7|chr1 (17186115-17184168)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1870, gnl|bosTau2|chr14 (21395097-21393243)
               

               
               1-1870, gnl|Hg17|chr8 (75311395-75309489)
               

               
               1-1870, gnl|Mm7|chr1 (17186115-17184168)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               bfe (1.34872)
               

               
               tbr (1.23343)
               

               
               vin (0.997672)
               

               
               isp (0.75188)
               

               
               ste (0.676041)
               

               
               sme (0.610874)
               

               
               ldo (0.582016)
               

               
               mas (0.42061)
               

               
               hea (0.204499)
               

               
               ctl (0.153069)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.34872)
               

               
               tbr (1.23343)
               

               
               vin (0.997672)
               

               
               isp (0.75188)
               

               
               ste (0.676041)
               

               
               sme (0.610874)
               

               
               ldo (0.582016)
               

               
               mas (0.42061)
               

               
               hea (0.204499)
               

               
               ctl (0.153069)
               

               
               liv (0.146284)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

	1-1870, gnl\|bosTau2\|chr14 (21395097-21393243)
	1-1870, gnl\|Hg17\|chr8 (75311395-75309489)
	1-1870, gnl\|Mm7\|chr1 (17186115-17184168)

	bfe (1.34872)
	tbr (1.23343)
	vin (0.997672)
	isp (0.75188)
	ste (0.676041)
	sme (0.610874)
	ldo (0.582016)
	mas (0.42061)
	hea (0.204499)
	ctl (0.153069)
	liv (0.146284)
	hlv (0.139256)
	ret (0.128733)
	ebs (0.118301)