Non-Coding RNA Search

Ss1.1-rpldo0117_o17.5

Sequence:


               
               GTGGTCTCCGTTCAGATCCTTCACCACCCGACAACAGGGGCGGGTCAGTGCAGTCCTTCC
GGCCCATCCGGCCGCTCTTCCTCTGGCCCCGCGCTGCCCTCTTCCCCGTCCAACGCTACC
TCCTCATCCTCTTCCTCCCCGGAAGCGCCTGGTTGGAAGTCGATGGTCCTCAGCATTTCG
GCCACGTGCTCCACGCTCACCCTGAATTGCTCCATGCTCTCATAGCCTGGCTCCGGCCGC
CCCGCCAGCTCCACCTTCGACATTGTCCCGACCTTATTGATCAGCTCCTTGGCCTGCTGC
AGGTCGAGTGCCATCTGCGGCTCCTCCATGGATTGGATGGCAGATTCCACCAGCTTAGAG
GAGGCCTCTAGGTGGTCTCCGTACTGGCGGATGAGGCCCCTGACCCGCTGCAGCTTCTCC
TCCTGTACCTTGGCCAGCGCCTGCAGCAGCTCACCCTTCCGCTCTTCCAGCACCGCGCAC
AGGGCTTCAAACCTCTGGTTTAGCAACTGCTTCTGCCTCCGGCTATTGTCCTCAATAGTC
TGGCACACCTCCTCCATCTGGGTGATCACTGCTTGCACACGGTCCTTGCCTGCCACCAGC
ATTGCGATGCCATCGCTGAGTTCACTCTTCTGACGTTTGTAAATGGTGGGCAGTGGGGCC
ACCTCACAGTCCTTGTGGGCACCGAAGACCTTGCAGAGGGAGCAGGTGGGGACTTCACAG
CTCAGGCAGTAGATGTTGATCTTCTCGTCCTCATGCTCCTCACACATGAGGTGCTGCTCA
GCCTTGGTGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTCTCCGTTCAGATCCTTCACCACCCGACAACAGGGGCGGGTCAGTGCAGTCCTTCC
GGCCCATCCGGCCGCTCTTCCTCTGGCCCCGCGCTGCCCTCTTCCCCGTCCAACGCTACC
TCCTCATCCTCTTCCTCCCCGGAAGCGCCTGGTTGGAAGTCGATGGTCCTCAGCATTTCG
GCCACGTGCTCCACGCTCACCCTGAATTGCTCCATGCTCTCATAGCCTGGCTCCGGCCGC
CCCGCCAGCTCCACCTTCGACATTGTCCCGACCTTATTGATCAGCTCCTTGGCCTGCTGC
AGGTCGAGTGCCATCTGCGGCTCCTCCATGGATTGGATGGCAGATTCCACCAGCTTAGAG
GAGGCCTCTAGGTGGTCTCCGTACTGGCGGATGAGGCCCCTGACCCGCTGCAGCTTCTCC
TCCTGTACCTTGGCCAGCGCCTGCAGCAGCTCACCCTTCCGCTCTTCCAGCACCGCGCAC
AGGGCTTCAAACCTCTGGTTTAGCAACTGCTTCTGCCTCCGGCTATTGTCCTCAATAGTC
TGGCACACCTCCTCCATCTGGGTGATCACTGCTTGCACACGGTCCTTGCCTGCCACCAGC
ATTGCGATGCCATCGCTGAGTTCACTCTTCTGACGTTTGTAAATGGTGGGCAGTGGGGCC
ACCTCACAGTCCTTGTGGGCACCGAAGACCTTGCAGAGGGAGCAGGTGGGGACTTCACAG
CTCAGGCAGTAGATGTTGATCTTCTCGTCCTCATGCTCCTCACACATGAGGTGCTGCTCA
GCCTTGGTGTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8CEL3_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8CEL3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               297-415, + strand, RNAz p=0.599249

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-415, + strand, RNAz p=0.599249

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               148-273, gnl|bosTau2|chr11 (52026324-52026449)
               

               
               148-273, gnl|Hg17|chr2 (27440857-27440732)
               

               
               148-273, gnl|Mm7|chr5 (30169529-30169404)
               


               
               297-535, gnl|bosTau2|chr11 (52027019-52027257)
               

               
               297-535, gnl|Hg17|chr2 (27440336-27440098)
               

               
               297-535, gnl|Mm7|chr5 (30168792-30168554)
               


               
               627-792, gnl|bosTau2|chr11 (52029832-52029997)
               

               
               627-792, gnl|Hg17|chr2 (27433935-27433770)
               

               
               627-792, gnl|Mm7|chr5 (30164675-30164510)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               148-273, gnl|bosTau2|chr11 (52026324-52026449)
               

               
               148-273, gnl|Hg17|chr2 (27440857-27440732)
               

               
               148-273, gnl|Mm7|chr5 (30169529-30169404)
               


               
               297-535, gnl|bosTau2|chr11 (52027019-52027257)
               

               
               297-535, gnl|Hg17|chr2 (27440336-27440098)
               

               
               297-535, gnl|Mm7|chr5 (30168792-30168554)
               


               
               627-792, gnl|bosTau2|chr11 (52029832-52029997)
               

               
               627-792, gnl|Hg17|chr2 (27433935-27433770)
               

               
               627-792, gnl|Mm7|chr5 (30164675-30164510)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               eru (0.120048)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               ldo (0.0970026)

	148-273, gnl\|bosTau2\|chr11 (52026324-52026449)
	148-273, gnl\|Hg17\|chr2 (27440857-27440732)
	148-273, gnl\|Mm7\|chr5 (30169529-30169404)

	297-535, gnl\|bosTau2\|chr11 (52027019-52027257)
	297-535, gnl\|Hg17\|chr2 (27440336-27440098)
	297-535, gnl\|Mm7\|chr5 (30168792-30168554)

	627-792, gnl\|bosTau2\|chr11 (52029832-52029997)
	627-792, gnl\|Hg17\|chr2 (27433935-27433770)
	627-792, gnl\|Mm7\|chr5 (30164675-30164510)