Ss1.1-rpldo0118_d21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTACGTTAGGAGTGAGCATATTTTATGCATTTGGCTACATGCTGCTGCCACTGTTTGCT TACTTCATCAGAGACTGGCGGATGCTGCTACTGGCCCTGACGGTGCCTGGATTGCTGTGT GTGGTGCTCTGGTGGTTCATTCCTGAGTCCCCCCGATGGCTCATCTCTCAGGGACGATTT CAGGAAGCTGATGTGATCATCCGCAAGGCTGCTGGACTCAATGGGATCGTTGCGCCCTCC ACCATCTTTGACTCAAGCGAGCTACAAGACCTGAGCTCCAAGAAGCAGCAGTCCCACAGC ATTCTGGATCTGCTCCGAACCCGGAATATCCGGATGGTCACCATCATGTCCATAATTCTG TGGATGACCATATCAGTGGGCTATTTCGGGCTTTCGCTGGACACTCCTAACTTGCATGGG GACGTCTTTTTGAACTGCTTCCTTTCGGCTCTGGTTGAAGTCCCAGCATACGTGTTGGCC TGGCTGCTGCTGCGGCACCTGCCCCGTCGCTATTCCATGGCCACTGCCCTCTTCCTGGGT GGCAGCGTTCTTCTCTTCGTGCAGCTGGTGCCCCCAGACCTGTATTATTTGGCTACAGTC CTGGTGATGGTGGGCAAGTTTGGAATCACTGCTGCCTTTTCCATGGTCTACGTGTACACA GCCGAGCTGTACCCTACAGTGGTCAGGAACATGGGCGTGGGGGTCAGCTCCACAGCGTCC CGCCTGGGCAGCATCCTGTCTCCCTACTTCATCTACCTTGGTGCCTACGACCGCTTCCTG CCCTACATTCTCATGGGGAGTCTGACCATCCTGACAGCCATCCTCACCTTGTTCCTCCCA GAGAGCTTTGGCACCCCACTCCCAGACACCATTGATCAGATGCTCAGGGTCAAAGGAATA AAATATAGGCAGACTCCAAGTCACTCAAGGATGTTAAAAGATGGTGAAGAAAGCCCCAGA GTGCTTAAAAGCACAGCCTTCTAACACCACCTCCAGTAAGAAAGTGGAGAGGGAAGACTG TGCTATCAGAAATGGCTTGTGCAGACCCTGAGTCCTTCAGTGGCCAAGGTCTTTGTTGAT TATTCTATGGACTCTGTGTCTGACCTGCTGTGGATGGACGCCCAGACTCAGAGCTGTAGT GGTCCTCAAGCACCACCTTCCCCTCAGGGACACTGTGGCTACTGGCAGACAACTTCGGAT GAATCCTAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTACGTTAGGAGTGAGCATATTTTATGCATTTGGCTACATGCTGCTGCCACTGTTTGCT TACTTCATCAGAGACTGGCGGATGCTGCTACTGGCCCTGACGGTGCCTGGATTGCTGTGT GTGGTGCTCTGGTGGTTCATTCCTGAGTCCCCCCGATGGCTCATCTCTCAGGGACGATTT CAGGAAGCTGATGTGATCATCCGCAAGGCTGCTGGACTCAATGGGATCGTTGCGCCCTCC ACCATCTTTGACTCAAGCGAGCTACAAGACCTGAGCTCCAAGAAGCAGCAGTCCCACAGC ATTCTGGATCTGCTCCGAACCCGGAATATCCGGATGGTCACCATCATGTCCATAATTCTG TGGATGACCATATCAGTGGGCTATTTCGGGCTTTCGCTGGACACTCCTAACTTGCATGGG GACGTCTTTTTGAACTGCTTCCTTTCGGCTCTGGTTGAAGTCCCAGCATACGTGTTGGCC TGGCTGCTGCTGCGGCACCTGCCCCGTCGCTATTCCATGGCCACTGCCCTCTTCCTGGGT GGCAGCGTTCTTCTCTTCGTGCAGCTGGTGCCCCCAGACCTGTATTATTTGGCTACAGTC CTGGTGATGGTGGGCAAGTTTGGAATCACTGCTGCCTTTTCCATGGTCTACGTGTACACA GCCGAGCTGTACCCTACAGTGGTCAGGAACATGGGCGTGGGGGTCAGCTCCACAGCGTCC CGCCTGGGCAGCATCCTGTCTCCCTACTTCATCTACCTTGGTGCCTACGACCGCTTCCTG CCCTACATTCTCATGGGGAGTCTGACCATCCTGACAGCCATCCTCACCTTGTTCCTCCCA GAGAGCTTTGGCACCCCACTCCCAGACACCATTGATCAGATGCTCAGGGTCAAAGGAATA AAATATAGGCAGACTCCAAGTCACTCAAGGATGTTAAAAGATGGTGAAGAAAGCCCCAGA GTGCTTAAAAGCACAGCCTTCTAACACCACCTCCAGTAAGAAAGTGGAGAGGGAAGACTG TGCTATCAGAAATGGCTTGTGCAGACCCTGAGTCCTTCAGTGGCCAAGGTCTTTGTTGAT TATTCTATGGACTCTGTGTCTGACCTGCTGTGGATGGACGCCCAGACTCAGAGCTGTAGT GGTCCTCAAGCACCACCTTCCCCTCAGGGACACTGTGGCTACTGGCAGACAACTTCGGAT GAATCCTAACCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 1-136, gnl|bosTau2|chr7 (20972437-20972572) | |
| 1-136, gnl|canFam2|chr11 (23679239-23679451) | |
| 1-136, gnl|danRer3|chr9 (834759-834950) | |
| 1-136, gnl|dasNov1|scaffold_9850 (10043-10252) | |
| 1-136, gnl|echTel1|scaffold_305139 (2352-2557) | |
| 1-136, gnl|fr1|chrUn (310805716-310805925) | |
| 1-136, gnl|galGal2|chr13 (15869827-15870028) | |
| 1-136, gnl|hg17|chr5 (131748901-131749110) | |
| 1-136, gnl|Hg17|chr5 (131748957-131749092) | |
| 1-136, gnl|loxAfr1|scaffold_19955 (58223-58434) | |
| 1-136, gnl|mm7|chr11 (53831884-53831672) | |
| 1-136, gnl|Mm7|chr11 (53831825-53831690) | |
| 1-136, gnl|monDom2|scaffold_6 (93308005-93307791) | |
| 1-136, gnl|oryCun1|scaffold_121191 (3248-3458) | |
| 1-136, gnl|panTro1|chr4 (138081842-138082051) | |
| 1-136, gnl|rheMac2|chr6 (128798592-128798801) | |
| 1-136, gnl|rn3|chr10 (39335717-39335507) | |
| 1-136, gnl|tetNig1|chr7 (8395813-8395618) | |
| 1-136, gnl|xenTro1|scaffold_292 (222002-222211) | |
| 362-577, gnl|bosTau2|chr7 (20977494-20977709) | |
| 362-577, gnl|canFam2|chr11 (23684701-23684948) | |
| 362-577, gnl|danRer3|chr9 (836785-837011) | |
| 362-577, gnl|dasNov1|scaffold_9850 (15012-15259) | |
| 362-577, gnl|echTel1|scaffold_305139 (7096-7332) | |
| 362-577, gnl|fr1|chrUn (310807570-310807800) | |
| 362-577, gnl|galGal2|chr13 (15875893-15876120) | |
| 362-577, gnl|hg17|chr5 (131754269-131754516) | |
| 362-577, gnl|Hg17|chr5 (131754280-131754495) | |
| 362-577, gnl|loxAfr1|scaffold_62849 (7371-7616) | |
| 362-577, gnl|mm7|chr11 (53826207-53825964) | |
| 362-577, gnl|Mm7|chr11 (53826194-53825979) | |
| 362-577, gnl|monDom2|scaffold_6 (93286237-93285998) | |
| 362-577, gnl|oryCun1|scaffold_203441 (6474-6721) | |
| 362-577, gnl|panTro1|chr4 (138087182-138087429) | |
| 362-577, gnl|rheMac2|chr6 (128803855-128804102) | |
| 362-577, gnl|rn3|chr10 (39330400-39330156) | |
| 362-577, gnl|tetNig1|chr15 (4689494-4689249) | |
| 362-577, gnl|xenTro1|scaffold_292 (226401-226643) | |
| 601-763, gnl|bosTau2|chr7 (20923408-20923570) | |
| 601-763, gnl|canFam2|chr11 (23643214-23643386) | |
| 601-763, gnl|danRer3|chr9 (1069126-1069298) | |
| 601-763, gnl|dasNov1|scaffold_9850 (16804-16976) | |
| 601-763, gnl|echTel1|scaffold_320171 (46604-46434) | |
| 601-763, gnl|fr1|chrUn (144554492-144554664) | |
| 601-763, gnl|galGal2|chr13 (15853733-15853905) | |
| 601-763, gnl|hg17|chr5 (131699423-131699595) | |
| 601-763, gnl|Hg17|chr5 (131699433-131699595) | |
| 601-763, gnl|loxAfr1|scaffold_30002 (249-78) | |
| 601-763, gnl|mm7|chr11 (53945710-53945538) | |
| 601-763, gnl|Mm7|chr11 (53945698-53945536) | |
| 601-763, gnl|monDom2|scaffold_6 (93371840-93371668) | |
| 601-763, gnl|oryCun1|scaffold_212295 (45829-46001) | |
| 601-763, gnl|panTro1|chr4 (138032446-138032618) | |
| 601-763, gnl|rheMac2|chr6 (128750304-128750476) | |
| 601-763, gnl|rn3|chr10 (39402587-39402420) | |
| 601-763, gnl|tetNig1|chr7 (8388361-8388533) | |
| 601-763, gnl|xenTro1|scaffold_292 (158771-158599) | |
| 896-1212, gnl|bosTau2|chr7 (20981013-20981324) | |
| 896-1212, gnl|Hg17|chr5 (131757775-131758101) | |
| 896-1212, gnl|Mm7|chr11 (53822654-53822382) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-136, gnl|bosTau2|chr7 (20972437-20972572) | |
| 1-136, gnl|canFam2|chr11 (23679239-23679451) | |
| 1-136, gnl|danRer3|chr9 (834759-834950) | |
| 1-136, gnl|dasNov1|scaffold_9850 (10043-10252) | |
| 1-136, gnl|echTel1|scaffold_305139 (2352-2557) | |
| 1-136, gnl|fr1|chrUn (310805716-310805925) | |
| 1-136, gnl|galGal2|chr13 (15869827-15870028) | |
| 1-136, gnl|hg17|chr5 (131748901-131749110) | |
| 1-136, gnl|Hg17|chr5 (131748957-131749092) | |
| 1-136, gnl|loxAfr1|scaffold_19955 (58223-58434) | |
| 1-136, gnl|mm7|chr11 (53831884-53831672) | |
| 1-136, gnl|Mm7|chr11 (53831825-53831690) | |
| 1-136, gnl|monDom2|scaffold_6 (93308005-93307791) | |
| 1-136, gnl|oryCun1|scaffold_121191 (3248-3458) | |
| 1-136, gnl|panTro1|chr4 (138081842-138082051) | |
| 1-136, gnl|rheMac2|chr6 (128798592-128798801) | |
| 1-136, gnl|rn3|chr10 (39335717-39335507) | |
| 1-136, gnl|tetNig1|chr7 (8395813-8395618) | |
| 1-136, gnl|xenTro1|scaffold_292 (222002-222211) | |
| 362-577, gnl|bosTau2|chr7 (20977494-20977709) | |
| 362-577, gnl|canFam2|chr11 (23684701-23684948) | |
| 362-577, gnl|danRer3|chr9 (836785-837011) | |
| 362-577, gnl|dasNov1|scaffold_9850 (15012-15259) | |
| 362-577, gnl|echTel1|scaffold_305139 (7096-7332) | |
| 362-577, gnl|fr1|chrUn (310807570-310807800) | |
| 362-577, gnl|galGal2|chr13 (15875893-15876120) | |
| 362-577, gnl|hg17|chr5 (131754269-131754516) | |
| 362-577, gnl|Hg17|chr5 (131754280-131754495) | |
| 362-577, gnl|loxAfr1|scaffold_62849 (7371-7616) | |
| 362-577, gnl|mm7|chr11 (53826207-53825964) | |
| 362-577, gnl|Mm7|chr11 (53826194-53825979) | |
| 362-577, gnl|monDom2|scaffold_6 (93286237-93285998) | |
| 362-577, gnl|oryCun1|scaffold_203441 (6474-6721) | |
| 362-577, gnl|panTro1|chr4 (138087182-138087429) | |
| 362-577, gnl|rheMac2|chr6 (128803855-128804102) | |
| 362-577, gnl|rn3|chr10 (39330400-39330156) | |
| 362-577, gnl|tetNig1|chr15 (4689494-4689249) | |
| 362-577, gnl|xenTro1|scaffold_292 (226401-226643) | |
| 601-763, gnl|bosTau2|chr7 (20923408-20923570) | |
| 601-763, gnl|canFam2|chr11 (23643214-23643386) | |
| 601-763, gnl|danRer3|chr9 (1069126-1069298) | |
| 601-763, gnl|dasNov1|scaffold_9850 (16804-16976) | |
| 601-763, gnl|echTel1|scaffold_320171 (46604-46434) | |
| 601-763, gnl|fr1|chrUn (144554492-144554664) | |
| 601-763, gnl|galGal2|chr13 (15853733-15853905) | |
| 601-763, gnl|hg17|chr5 (131699423-131699595) | |
| 601-763, gnl|Hg17|chr5 (131699433-131699595) | |
| 601-763, gnl|loxAfr1|scaffold_30002 (249-78) | |
| 601-763, gnl|mm7|chr11 (53945710-53945538) | |
| 601-763, gnl|Mm7|chr11 (53945698-53945536) | |
| 601-763, gnl|monDom2|scaffold_6 (93371840-93371668) | |
| 601-763, gnl|oryCun1|scaffold_212295 (45829-46001) | |
| 601-763, gnl|panTro1|chr4 (138032446-138032618) | |
| 601-763, gnl|rheMac2|chr6 (128750304-128750476) | |
| 601-763, gnl|rn3|chr10 (39402587-39402420) | |
| 601-763, gnl|tetNig1|chr7 (8388361-8388533) | |
| 601-763, gnl|xenTro1|scaffold_292 (158771-158599) | |
| 896-1212, gnl|bosTau2|chr7 (20981013-20981324) | |
| 896-1212, gnl|Hg17|chr5 (131757775-131758101) | |
| 896-1212, gnl|Mm7|chr11 (53822654-53822382) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| ldo (0.0970026) |