Ss1.1-rpldo0118_e18.5.5
|
CTCGCAAGGTCGCTTTGCAGAAGGGGAAGCGCGCGTATGTGACAGGACCCTCGTTCAGGG
GCGCGCCGTGTCTTGCTTCCTTGGTACCGGCGGCGACATGTCGGGATATACGCCCGACGA
GAAACTGCGACTGCAGCAGCTGCGAGAGCTGAGAAGGCGATGGCTGAAGGATCAGGAGCT
GAGCCCCCGGGAACCGGTGCTGCCCCCGCGGCGGGTGTGGCCTATGGAGCAATTCTGGAA
TAAGTTTTTGCAGGATGGAGCCCCCTGGAAGAACGTGATCTATAAGACATACCGACACAG
CATCTTTGCTGTTACTCATGTGCTTATCCCTGTATGGATTATTCATTATTATCTTAAATA
TCATGTAACTGCAAAACCATATACCGTCGTTGAAAGGAAGCCCAGAATATTCCCAGGTGA
TACAATCCTGGAAACTGGAGAAGTAATCCCACTAATGAAAGAATTTCCTGATCAACATCA
CTGAAGATAACTTTAAAATTTCAAAGGCATATGAGCTATATTACCACACTTACTGAATAT
ATTTTCTGGAAAAGTAACTTTAATAAAGTTTACTCTCAGATATGTGTCTTTTTCTTCCCA
AACATTATACAATTTGAGACTCTTTGAATTATTTAATAAATAAAAACTGGGCATGTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCGCAAGGTCGCTTTGCAGAAGGGGAAGCGCGCGTATGTGACAGGACCCTCGTTCAGGG
GCGCGCCGTGTCTTGCTTCCTTGGTACCGGCGGCGACATGTCGGGATATACGCCCGACGA
GAAACTGCGACTGCAGCAGCTGCGAGAGCTGAGAAGGCGATGGCTGAAGGATCAGGAGCT
GAGCCCCCGGGAACCGGTGCTGCCCCCGCGGCGGGTGTGGCCTATGGAGCAATTCTGGAA
TAAGTTTTTGCAGGATGGAGCCCCCTGGAAGAACGTGATCTATAAGACATACCGACACAG
CATCTTTGCTGTTACTCATGTGCTTATCCCTGTATGGATTATTCATTATTATCTTAAATA
TCATGTAACTGCAAAACCATATACCGTCGTTGAAAGGAAGCCCAGAATATTCCCAGGTGA
TACAATCCTGGAAACTGGAGAAGTAATCCCACTAATGAAAGAATTTCCTGATCAACATCA
CTGAAGATAACTTTAAAATTTCAAAGGCATATGAGCTATATTACCACACTTACTGAATAT
ATTTTCTGGAAAAGTAACTTTAATAAAGTTTACTCTCAGATATGTGTCTTTTTCTTCCCA
AACATTATACAATTTGAGACTCTTTGAATTATTTAATAAATAAAAACTGGGCATGTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
|
1-277, gnl|bosTau2|chr8 (5266066-5266341) |
|
1-277, gnl|Hg17|chr9 (32563154-32562879) |
|
1-277, gnl|Mm7|chr4 (40417866-40417621) |
| |
|
416-666, gnl|bosTau2|chr8 (5282100-5282368) |
|
416-666, gnl|canFam2|chr11 (52850291-52850633) |
|
416-666, gnl|danRer3|chr1 (26172947-26173333) |
|
416-666, gnl|dasNov1|scaffold_211805 (1891-2257) |
|
416-666, gnl|echTel1|scaffold_319393 (257594-257264) |
|
416-666, gnl|hg17|chr9 (32543547-32543873) |
|
416-666, gnl|Hg17|chr9 (32543942-32543686) |
|
416-666, gnl|loxAfr1|scaffold_18250 (24647-24993) |
|
416-666, gnl|mm7|chr4 (40408958-40409241) |
|
416-666, gnl|Mm7|chr4 (40409310-40409059) |
|
416-666, gnl|oryCun1|scaffold_102634 (13922-14247) |
|
416-666, gnl|panTro1|chr11 (33035469-33035795) |
|
416-666, gnl|rheMac2|chr15 (44668774-44668437) |
|
416-666, gnl|rn3|chr5 (57677269-57677548) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-277, gnl|bosTau2|chr8 (5266066-5266341) |
|
1-277, gnl|Hg17|chr9 (32563154-32562879) |
|
1-277, gnl|Mm7|chr4 (40417866-40417621) |
| |
|
416-666, gnl|bosTau2|chr8 (5282100-5282368) |
|
416-666, gnl|canFam2|chr11 (52850291-52850633) |
|
416-666, gnl|danRer3|chr1 (26172947-26173333) |
|
416-666, gnl|dasNov1|scaffold_211805 (1891-2257) |
|
416-666, gnl|echTel1|scaffold_319393 (257594-257264) |
|
416-666, gnl|hg17|chr9 (32543547-32543873) |
|
416-666, gnl|Hg17|chr9 (32543942-32543686) |
|
416-666, gnl|loxAfr1|scaffold_18250 (24647-24993) |
|
416-666, gnl|mm7|chr4 (40408958-40409241) |
|
416-666, gnl|Mm7|chr4 (40409310-40409059) |
|
416-666, gnl|oryCun1|scaffold_102634 (13922-14247) |
|
416-666, gnl|panTro1|chr11 (33035469-33035795) |
|
416-666, gnl|rheMac2|chr15 (44668774-44668437) |
|
416-666, gnl|rn3|chr5 (57677269-57677548) |
|
isp (1.80451) |
|
vin (1.66279) |
|
ssp (1.3552) |
|
bfe (1.049) |
|
hea (0.817996) |
|
hlv (0.696282) |
|
ldo (0.679018) |
|
ste (0.676041) |
|
pgl (0.592417) |
|
col (0.585023) |
|
cst (0.560146) |
|
che (0.545256) |
|
fce (0.543183) |
|
sto (0.539471) |
|
cki (0.495704) |
|
cbe (0.478469) |
|
mas (0.42061) |
|
elu (0.385356) |
|
bla (0.373042) |
|
nep (0.36785) |
|
ill (0.351185) |
|
sin (0.349895) |
|
rec (0.346141) |
|
jca (0.34188) |
|
spc (0.340097) |
|
nco (0.323468) |
|
sme (0.305437) |
|
lyg (0.266205) |
|
nmm (0.265604) |
|
thg (0.253582) |
|
tra (0.246184) |
|
ebs (0.236602) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
mga (0.160205) |
|
fco (0.157208) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
ova (0.129132) |
|
sug (0.127291) |
|
ese (0.126502) |
|
clu (0.119646) |
|
med (0.116252) |
|
ecc (0.115035) |
|
eje (0.0988338) |
|
isp (1.80451) |
|
vin (1.66279) |
|
ssp (1.3552) |
|
bfe (1.049) |
|
hea (0.817996) |
|
hlv (0.696282) |
|
ldo (0.679018) |
|
ste (0.676041) |
|
pgl (0.592417) |
|
col (0.585023) |
|
cst (0.560146) |
|
che (0.545256) |
|
fce (0.543183) |
|
sto (0.539471) |
|
cki (0.495704) |
|
cbe (0.478469) |
|
mas (0.42061) |
|
elu (0.385356) |
|
bla (0.373042) |
|
nep (0.36785) |
|
ill (0.351185) |
|
sin (0.349895) |
|
rec (0.346141) |
|
jca (0.34188) |
|
spc (0.340097) |
|
nco (0.323468) |
|
sme (0.305437) |
|
lyg (0.266205) |
|
nmm (0.265604) |
|
thg (0.253582) |
|
tra (0.246184) |
|
ebs (0.236602) |
|
fli (0.202881) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
mga (0.160205) |
|
fco (0.157208) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
ova (0.129132) |
|
sug (0.127291) |
|
ese (0.126502) |
|
clu (0.119646) |
|
med (0.116252) |
|
ecc (0.115035) |
|
eje (0.0988338) |
