Ss1.1-rpldo0118_n21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTGAAATATATATGCATGCCCTTATACCATTTAACACTCTGGGTCCACTTTCAAGATA CTGGGCTGTGGATCAACCGAACCACCACTCCTCTTCCAAAGAATCACTTTAACAGGTTCC TCTAGAGGTGCTCCTCTTTTAACCCATCCTTTGAAATAAAATGGCACCAAAGAAAGACGT GAAGAAACCTGCTGCTGCTGCTGCCGCAGCCCCTGCCCCTGCCCCGGCACCTGCACCTGC ACTCACTCTTCAGCTTCGCCGCTGTTTGCAGCCCAGCAGTTTCATCATGTCCTTCAGTGC TGACCAGATTGCTGAATTCAAGGAGGCATTTCTCCTCTTTGACAGAACAGGCGAATGCAA GATCACCCTAAGCCAGGTTGGTGATGTCCTTCGGGCTCTGGGCACAAATCCCACCAATGC AGAGGTCAAGAAGGTTCTGGGAAACCCCAGCAATGAAGAGATGAATGCCAAGAAAATTGA GTTTGAACAATTCCTGCCTATGCTGCAAGCTATTTCCAACAACAAGGACCAGGGAAGCTA TGAAGACTTTGTTGAGGGTCTGCGTGTCTTTGACAAGGAAGGCAATGGTACAGTCATGGG TGCTGAACTTCGTCATGTTCTAGCTACACTAGGTGAAAAGATGAAAGAGGAAGAAGTGGA AGCCCTGATGGCAGGTCAAGAAGACTCCAATGGCTGCATCAACTATGAAGCCTTTGTCAA GCACATCATGTCTATCTAAATAGAGCTCTCAAGATCAAGCACTGCGTTAAGAAGACTGAC TGGAACCTTATTTTAATAATACCCATGACTAACTGTCCAAATCTGTTTACCACCATTCAG GAAAACAAAACAACTTGGACCATTCTGGACTAAGGGACTCCCTGAGTTTTTATACACTGT TTCCCTCTGAATTATATTCATACCACACAAACCAAGTGTCTGCTGCTCTAGACAAGAAGG ATAAAATACTGACAATCTCAAATCCAAGCACCACTCTTTATTTTCTACAGTGGGTCAAAA AAATCCTTAAAATAATAAATCAATAAATAATTTTGGTCAGTCTGTACAGTTCAAATTGCA TTGTGTTTTTATCTTCTTGTTTAGAGAAACTATTTACAAAAATCTCAATTCTTTTGTTAA TGTACAGAATAATGATGAATTATAACATTTTAAAAGAATAAATAATTACAGCATACACAA TAACAAACTGAAAAATAACAATAGTTATATATCATGGAAAAAACAAAATAGAAAAACAAG GAAATTTAGATAGGATCAAAGACATTTTAATATAAGCTATCCAGGCAATTTAAGATGAAA GCAGGTTTCTTCAGTTTTGTGTAAATCATTGTATACATAACTTGATCTCTTTCACTTCTA GTGACAATCCGGCCTAGCAAAAAATTCTAATAAGCCCTTGATCTGTCTCACTGAATGTCT TCACGGATAAAATTTAAAGTGACTTTTCAGCTGTTACTTTAAAAAAGCCTCTCTGGGGAT GAGACTCTTACTCAAGAACTCAAGAGCCTGTCTATTAATATTCTCTCTCCTGCTACAATC CCCTCTACCTTGCATGTCCATGTCCCCAGATCTTGGTTCAATCTTTTAGTACATGCTCTA AATGGTAACACTAATTGATAGACAAATTCATAGTATAAACTTCACCTCATATCATACTGC TATCATGTTGACACTTTTTCTTTAGAATAGAAGCATAATAGTTGGATATTTAGAAGAGAT GAAACGATAGTTTTCCCACTCTCTAAAAAGATATCTTTAATATATGGGATTAAAAAATCT CTGAAAAATACCAGCCTGCCTATACATTTTTGTGCACTGACATCAGGCACTTCAGGTCAT CATGCTCCTATTTTAGCAAAGGTCACTCAGATTTCAGTAGCCAACAGCTTCAACTTTGAT CCAAGTTCCTGTAGCCAAGATGATGTTGGGACATTACCATCTTTCTTTTAAGGAAAATTC CCTATGGCCTCAAGATATTTAAGGCCAAATTTGCCTAAGATCAGAAATTGGAAATTTCAC ACAGCACTGTCCAATAGAACCTTCAGTGAAAATGGCAATCTCTATCTACATTCCCCTGTG TGGTAATCACCAACTACATTTAGCGACTGACCACTTAAAAAAATGTGGCTGGTGTGACTG CAGAGTTGAATTTTCAATTGTGTCTCATTTTAATTAATATAAATAGCTACTTGTGTCTCA TGAATACCATACTGGACAGAGCAGCTCTCAAAAAATATTTATATTTGCTTGTTACATCAA GAAATAGAAAGTGTTTTTAAAAATTACAAATGTCACCATATAGAGAAGTTGACTGGTACA AATAGTTCAATCATAAAAGCTCATTTTTGCTTTGGAATATGTTATTAAATTTCTCATCTC CTACACTCCTGTAACATTTTTCAATTAGAAAAATGTGATGTCTGCAAGGCACTAAATTTT TAGTCTCAAGCTTCATATTTAATATTTTTCCCTCAAGACCATATAAAACTGTTTTAACTC CCCATGGGATAACATCTAGTATACTGTCATGGGATCTAACCTTATTAAATTACTATGTGT GAGATGCCCATATCTCAAGTTGTAGCAGGTGCAAAATAGAGTAGCAGGTGGAAGAGTGAC AGTAATTTTAAACATCTATACCAGCTGGCAAAAATGACAGGTGCTTAATTCCTTAGTCCT TAAAAATAACTGTTGAAAAGCCTACACAGCATAAGCAAATATTTTCAAGTTTGTTTTTTA ACTATCTTCAAGTCACCTTTCTGACATATATTAATATAATGTAATATTATACATTAATTT TTGCCGTAAAATATATTTGAAACTTAAATAGCACACAAGAACTTAATTTTTCTCCTCTCT GAATGAAACAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTGAAATATATATGCATGCCCTTATACCATTTAACACTCTGGGTCCACTTTCAAGATA CTGGGCTGTGGATCAACCGAACCACCACTCCTCTTCCAAAGAATCACTTTAACAGGTTCC TCTAGAGGTGCTCCTCTTTTAACCCATCCTTTGAAATAAAATGGCACCAAAGAAAGACGT GAAGAAACCTGCTGCTGCTGCTGCCGCAGCCCCTGCCCCTGCCCCGGCACCTGCACCTGC ACTCACTCTTCAGCTTCGCCGCTGTTTGCAGCCCAGCAGTTTCATCATGTCCTTCAGTGC TGACCAGATTGCTGAATTCAAGGAGGCATTTCTCCTCTTTGACAGAACAGGCGAATGCAA GATCACCCTAAGCCAGGTTGGTGATGTCCTTCGGGCTCTGGGCACAAATCCCACCAATGC AGAGGTCAAGAAGGTTCTGGGAAACCCCAGCAATGAAGAGATGAATGCCAAGAAAATTGA GTTTGAACAATTCCTGCCTATGCTGCAAGCTATTTCCAACAACAAGGACCAGGGAAGCTA TGAAGACTTTGTTGAGGGTCTGCGTGTCTTTGACAAGGAAGGCAATGGTACAGTCATGGG TGCTGAACTTCGTCATGTTCTAGCTACACTAGGTGAAAAGATGAAAGAGGAAGAAGTGGA AGCCCTGATGGCAGGTCAAGAAGACTCCAATGGCTGCATCAACTATGAAGCCTTTGTCAA GCACATCATGTCTATCTAAATAGAGCTCTCAAGATCAAGCACTGCGTTAAGAAGACTGAC TGGAACCTTATTTTAATAATACCCATGACTAACTGTCCAAATCTGTTTACCACCATTCAG GAAAACAAAACAACTTGGACCATTCTGGACTAAGGGACTCCCTGAGTTTTTATACACTGT TTCCCTCTGAATTATATTCATACCACACAAACCAAGTGTCTGCTGCTCTAGACAAGAAGG ATAAAATACTGACAATCTCAAATCCAAGCACCACTCTTTATTTTCTACAGTGGGTCAAAA AAATCCTTAAAATAATAAATCAATAAATAATTTTGGTCAGTCTGTACAGTTCAAATTGCA TTGTGTTTTTATCTTCTTGTTTAGAGAAACTATTTACAAAAATCTCAATTCTTTTGTTAA TGTACAGAATAATGATGAATTATAACATTTTAAAAGAATAAATAATTACAGCATACACAA TAACAAACTGAAAAATAACAATAGTTATATATCATGGAAAAAACAAAATAGAAAAACAAG GAAATTTAGATAGGATCAAAGACATTTTAATATAAGCTATCCAGGCAATTTAAGATGAAA GCAGGTTTCTTCAGTTTTGTGTAAATCATTGTATACATAACTTGATCTCTTTCACTTCTA GTGACAATCCGGCCTAGCAAAAAATTCTAATAAGCCCTTGATCTGTCTCACTGAATGTCT TCACGGATAAAATTTAAAGTGACTTTTCAGCTGTTACTTTAAAAAAGCCTCTCTGGGGAT GAGACTCTTACTCAAGAACTCAAGAGCCTGTCTATTAATATTCTCTCTCCTGCTACAATC CCCTCTACCTTGCATGTCCATGTCCCCAGATCTTGGTTCAATCTTTTAGTACATGCTCTA AATGGTAACACTAATTGATAGACAAATTCATAGTATAAACTTCACCTCATATCATACTGC TATCATGTTGACACTTTTTCTTTAGAATAGAAGCATAATAGTTGGATATTTAGAAGAGAT GAAACGATAGTTTTCCCACTCTCTAAAAAGATATCTTTAATATATGGGATTAAAAAATCT CTGAAAAATACCAGCCTGCCTATACATTTTTGTGCACTGACATCAGGCACTTCAGGTCAT CATGCTCCTATTTTAGCAAAGGTCACTCAGATTTCAGTAGCCAACAGCTTCAACTTTGAT CCAAGTTCCTGTAGCCAAGATGATGTTGGGACATTACCATCTTTCTTTTAAGGAAAATTC CCTATGGCCTCAAGATATTTAAGGCCAAATTTGCCTAAGATCAGAAATTGGAAATTTCAC ACAGCACTGTCCAATAGAACCTTCAGTGAAAATGGCAATCTCTATCTACATTCCCCTGTG TGGTAATCACCAACTACATTTAGCGACTGACCACTTAAAAAAATGTGGCTGGTGTGACTG CAGAGTTGAATTTTCAATTGTGTCTCATTTTAATTAATATAAATAGCTACTTGTGTCTCA TGAATACCATACTGGACAGAGCAGCTCTCAAAAAATATTTATATTTGCTTGTTACATCAA GAAATAGAAAGTGTTTTTAAAAATTACAAATGTCACCATATAGAGAAGTTGACTGGTACA AATAGTTCAATCATAAAAGCTCATTTTTGCTTTGGAATATGTTATTAAATTTCTCATCTC CTACACTCCTGTAACATTTTTCAATTAGAAAAATGTGATGTCTGCAAGGCACTAAATTTT TAGTCTCAAGCTTCATATTTAATATTTTTCCCTCAAGACCATATAAAACTGTTTTAACTC CCCATGGGATAACATCTAGTATACTGTCATGGGATCTAACCTTATTAAATTACTATGTGT GAGATGCCCATATCTCAAGTTGTAGCAGGTGCAAAATAGAGTAGCAGGTGGAAGAGTGAC AGTAATTTTAAACATCTATACCAGCTGGCAAAAATGACAGGTGCTTAATTCCTTAGTCCT TAAAAATAACTGTTGAAAAGCCTACACAGCATAAGCAAATATTTTCAAGTTTGTTTTTTA ACTATCTTCAAGTCACCTTTCTGACATATATTAATATAATGTAATATTATACATTAATTT TTGCCGTAAAATATATTTGAAACTTAAATAGCACACAAGAACTTAATTTTTCTCCTCTCT GAATGAAACAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-146, - strand, RNAz p=0.520245 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-146, - strand, RNAz p=0.520245 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-242, gnl|bosTau2|chr11 (29527137-29527390) | |
| 1-242, gnl|Hg17|chr2 (211005438-211005191) | |
| 1-242, gnl|Mm7|chr1 (67184775-67184542) | |
| 309-458, gnl|bosTau2|chr11 (29545857-29546006) | |
| 309-458, gnl|canFam2|chr37 (21149953-21150103) | |
| 309-458, gnl|danRer3|chr3 (15203197-15203041) | |
| 309-458, gnl|dasNov1|scaffold_1304 (78835-78985) | |
| 309-458, gnl|echTel1|scaffold_234945 (8448-8598) | |
| 309-458, gnl|fr1|chrUn (75415780-75415630) | |
| 309-458, gnl|galGal2|chr7 (2721354-2721504) | |
| 309-458, gnl|hg17|chr2 (210988647-210988797) | |
| 309-458, gnl|Hg17|chr2 (210988799-210988650) | |
| 309-458, gnl|loxAfr1|scaffold_6716 (50550-50700) | |
| 309-458, gnl|mm7|chr1 (67169891-67170041) | |
| 309-458, gnl|Mm7|chr1 (67170043-67169894) | |
| 309-458, gnl|monDom2|scaffold_39 (12509896-12509746) | |
| 309-458, gnl|oryCun1|scaffold_175671 (7642-7492) | |
| 309-458, gnl|panTro1|chr13 (101080020-101080170) | |
| 309-458, gnl|rheMac2|chr11 (53218328-53218178) | |
| 309-458, gnl|rn3|chr9 (65869468-65869618) | |
| 309-458, gnl|tetNig1|chr11 (6605815-6605666) | |
| 309-458, gnl|xenTro1|scaffold_1343 (52037-52187) | |
| 1299-2888, gnl|bosTau2|chr11 (29552620-29554195) | |
| 1299-2888, gnl|Hg17|chr2 (210980135-210978542) | |
| 1299-2888, gnl|Mm7|chr1 (67163565-67161705) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-242, gnl|bosTau2|chr11 (29527137-29527390) | |
| 1-242, gnl|Hg17|chr2 (211005438-211005191) | |
| 1-242, gnl|Mm7|chr1 (67184775-67184542) | |
| 309-458, gnl|bosTau2|chr11 (29545857-29546006) | |
| 309-458, gnl|canFam2|chr37 (21149953-21150103) | |
| 309-458, gnl|danRer3|chr3 (15203197-15203041) | |
| 309-458, gnl|dasNov1|scaffold_1304 (78835-78985) | |
| 309-458, gnl|echTel1|scaffold_234945 (8448-8598) | |
| 309-458, gnl|fr1|chrUn (75415780-75415630) | |
| 309-458, gnl|galGal2|chr7 (2721354-2721504) | |
| 309-458, gnl|hg17|chr2 (210988647-210988797) | |
| 309-458, gnl|Hg17|chr2 (210988799-210988650) | |
| 309-458, gnl|loxAfr1|scaffold_6716 (50550-50700) | |
| 309-458, gnl|mm7|chr1 (67169891-67170041) | |
| 309-458, gnl|Mm7|chr1 (67170043-67169894) | |
| 309-458, gnl|monDom2|scaffold_39 (12509896-12509746) | |
| 309-458, gnl|oryCun1|scaffold_175671 (7642-7492) | |
| 309-458, gnl|panTro1|chr13 (101080020-101080170) | |
| 309-458, gnl|rheMac2|chr11 (53218328-53218178) | |
| 309-458, gnl|rn3|chr9 (65869468-65869618) | |
| 309-458, gnl|tetNig1|chr11 (6605815-6605666) | |
| 309-458, gnl|xenTro1|scaffold_1343 (52037-52187) | |
| 1299-2888, gnl|bosTau2|chr11 (29552620-29554195) | |
| 1299-2888, gnl|Hg17|chr2 (210980135-210978542) | |
| 1299-2888, gnl|Mm7|chr1 (67163565-67161705) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| ldo (69.7449) | |
| ste (58.6804) | |
| sme (51.0079) | |
| tbr (48.7203) | |
| bfe (31.3202) | |
| nms (20.1027) | |
| ssp (18.9728) | |
| isp (17.594) | |
| mas (15.3523) | |
| vin (13.9674) | |
| ese (4.30108) | |
| ton (2.6325) | |
| nep (2.2071) | |
| cki (1.81758) | |
| ctl (1.68376) | |
| eru (1.44058) | |
| pro (1.02407) | |
| nca (0.821243) | |
| ret (0.7724) | |
| lyg (0.532411) | |
| jca (0.45584) | |
| eye (0.341006) | |
| pty (0.285429) | |
| col (0.195008) | |
| lin (0.145603) | |
| eep (0.122564) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (69.7449) | |
| ste (58.6804) | |
| sme (51.0079) | |
| tbr (48.7203) | |
| bfe (31.3202) | |
| nms (20.1027) | |
| ssp (18.9728) | |
| isp (17.594) | |
| mas (15.3523) | |
| vin (13.9674) | |
| ese (4.30108) | |
| ton (2.6325) | |
| nep (2.2071) | |
| cki (1.81758) | |
| ctl (1.68376) | |
| eru (1.44058) | |
| pro (1.02407) | |
| nca (0.821243) | |
| ret (0.7724) | |
| lyg (0.532411) | |
| jca (0.45584) | |
| eye (0.341006) | |
| pty (0.285429) | |
| col (0.195008) | |
| lin (0.145603) | |
| eep (0.122564) |