Ss1.1-rpldo0119_a15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCACCAGAACAGAGGAATAGCAGTGGCTTATGTCCAGTTTTCAATACCGGCTCTCCGG CTTCCATTGAGTCTGGCAGTAGAAGAGTATCTTTCTCGGGCTAGACAGCTGCACGGCAGC TTCCTCCTCTGCGCGCGCGCCTCGCGTTGGCGTGGGCGTGGGGGAAGCAGGAATATAGTA TTTAATGAAAACAATCCATGCATAAGGAGTGAAAATGGCAGGCTTCCTGGATAATTTCCG TTGGCCAGAATGTGAATGTATTGACTGGAGTGAGAGAAGAAATGCAGTGGCTTCTGTGGT AGCAGGTATCTTGTTTTTTACAGGTTGGTGGATAATGATTGATGCAGCTGTGGTGTATCC TAAGCCAGAACAGCTGAACCATGCCTTTCACACATGTGGTGTATTTTCCACATTGGCTTT CTTCATGATCAATGCCGTGTCCAACGCTCAGGTGAGAGGTGACAGCTATGAAAGCGGCTG TTTAGGAAGAACAGGCGCTCGAGTTTGGCTCTTCATCGGTTTCATGTTGATGTTTGGGTC ACTTATTGCTTCTATGTGGATTCTCTTTGGTGCATATGTTACCCAAAATACTGATGTTTA TCCAGGACTAGCTGTGTTTTTTCAAAATGCACTTATATTTTTTAGCACCCTGATCTACAA ATTCGGAAGAACCGAAGAGCTATGGACCTGAGATCACTTCTCAAATCCCAGTTTCCTTTT GTTACATTCTCTTTGTAGATAAGTTTTTATCTCTCAATATAATTTCCACATTGCCAAATA GAATAGGTTGTACATTGTTTTGTTTCTTACCACTTTTATGCTGAGTTGTGAAATCGTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCACCAGAACAGAGGAATAGCAGTGGCTTATGTCCAGTTTTCAATACCGGCTCTCCGG CTTCCATTGAGTCTGGCAGTAGAAGAGTATCTTTCTCGGGCTAGACAGCTGCACGGCAGC TTCCTCCTCTGCGCGCGCGCCTCGCGTTGGCGTGGGCGTGGGGGAAGCAGGAATATAGTA TTTAATGAAAACAATCCATGCATAAGGAGTGAAAATGGCAGGCTTCCTGGATAATTTCCG TTGGCCAGAATGTGAATGTATTGACTGGAGTGAGAGAAGAAATGCAGTGGCTTCTGTGGT AGCAGGTATCTTGTTTTTTACAGGTTGGTGGATAATGATTGATGCAGCTGTGGTGTATCC TAAGCCAGAACAGCTGAACCATGCCTTTCACACATGTGGTGTATTTTCCACATTGGCTTT CTTCATGATCAATGCCGTGTCCAACGCTCAGGTGAGAGGTGACAGCTATGAAAGCGGCTG TTTAGGAAGAACAGGCGCTCGAGTTTGGCTCTTCATCGGTTTCATGTTGATGTTTGGGTC ACTTATTGCTTCTATGTGGATTCTCTTTGGTGCATATGTTACCCAAAATACTGATGTTTA TCCAGGACTAGCTGTGTTTTTTCAAAATGCACTTATATTTTTTAGCACCCTGATCTACAA ATTCGGAAGAACCGAAGAGCTATGGACCTGAGATCACTTCTCAAATCCCAGTTTCCTTTT GTTACATTCTCTTTGTAGATAAGTTTTTATCTCTCAATATAATTTCCACATTGCCAAATA GAATAGGTTGTACATTGTTTTGTTTCTTACCACTTTTATGCTGAGTTGTGAAATCGTTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 171-313, gnl|bosTau2|chr1 (1212400-1212260) | |
| 171-313, gnl|canFam2|chr31 (31093053-31093191) | |
| 171-313, gnl|canFam2|chr31 (31093053-31093151) | |
| 171-313, gnl|dasNov1|scaffold_192300 (1795-1933) | |
| 171-313, gnl|dasNov1|scaffold_192300 (1795-1893) | |
| 171-313, gnl|echTel1|scaffold_213905 (11827-11689) | |
| 171-313, gnl|echTel1|scaffold_213905 (11827-11729) | |
| 171-313, gnl|fr1|chrUn (305709128-305709226) | |
| 171-313, gnl|fr1|chrUn (305709128-305709226) | |
| 171-313, gnl|galGal2|chr1 (99050387-99050553) | |
| 171-313, gnl|hg17|chr19 (57305698-57305794) | |
| 171-313, gnl|hg17|chr21 (33762965-33763103) | |
| 171-313, gnl|Hg17|chr21 (33763104-33762964) | |
| 171-313, gnl|loxAfr1|scaffold_113590 (881-1019) | |
| 171-313, gnl|loxAfr1|scaffold_113590 (881-979) | |
| 171-313, gnl|mm7|chr16 (91637289-91637427) | |
| 171-313, gnl|mm7|chr16 (91637289-91637387) | |
| 171-313, gnl|Mm7|chr16 (91637428-91637288) | |
| 171-313, gnl|monDom2|scaffold_29 (14314174-14314036) | |
| 171-313, gnl|oryCun1|scaffold_109342 (375-237) | |
| 171-313, gnl|oryCun1|scaffold_109342 (375-277) | |
| 171-313, gnl|panTro1|chr20 (54734510-54734606) | |
| 171-313, gnl|panTro1|chr22 (33739151-33739289) | |
| 171-313, gnl|rheMac2|chr19 (58171949-58172047) | |
| 171-313, gnl|rheMac2|chr3 (13085007-13084869) | |
| 171-313, gnl|rn3|chr11 (31586547-31586685) | |
| 171-313, gnl|rn3|chr11 (31586547-31586645) | |
| 171-313, gnl|tetNig1|chrUn_random (110905355-110905246) | |
| 171-313, gnl|tetNig1|chrUn_random (110905355-110905257) | |
| 635-820, gnl|bosTau2|chr1 (1195482-1195294) | |
| 635-820, gnl|canFam2|chr31 (31080321-31080653) | |
| 635-820, gnl|canFam2|chr31 (31080525-31080640) | |
| 635-820, gnl|dasNov1|scaffold_192300 (1121-1445) | |
| 635-820, gnl|dasNov1|scaffold_192300 (1292-1431) | |
| 635-820, gnl|hg17|chr19 (57305246-57305370) | |
| 635-820, gnl|hg17|chr21 (33744670-33744997) | |
| 635-820, gnl|Hg17|chr21 (33745052-33744868) | |
| 635-820, gnl|loxAfr1|scaffold_810 (152025-151708) | |
| 635-820, gnl|loxAfr1|scaffold_810 (151849-151721) | |
| 635-820, gnl|mm7|chr16 (91626163-91626461) | |
| 635-820, gnl|mm7|chr16 (91626330-91626450) | |
| 635-820, gnl|Mm7|chr16 (91626516-91626335) | |
| 635-820, gnl|monDom2|scaffold_29 (14328040-14327743) | |
| 635-820, gnl|oryCun1|scaffold_173144 (8642-8310) | |
| 635-820, gnl|oryCun1|scaffold_173144 (8447-8323) | |
| 635-820, gnl|panTro1|chr22 (33720567-33720894) | |
| 635-820, gnl|panTro1|chr22 (33720764-33720881) | |
| 635-820, gnl|rheMac2|chr19 (58171174-58171294) | |
| 635-820, gnl|rheMac2|chr3 (13103543-13103215) | |
| 635-820, gnl|rn3|chr11 (31574199-31574514) | |
| 635-820, gnl|rn3|chr11 (31574403-31574499) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 171-313, gnl|bosTau2|chr1 (1212400-1212260) | |
| 171-313, gnl|canFam2|chr31 (31093053-31093191) | |
| 171-313, gnl|canFam2|chr31 (31093053-31093151) | |
| 171-313, gnl|dasNov1|scaffold_192300 (1795-1933) | |
| 171-313, gnl|dasNov1|scaffold_192300 (1795-1893) | |
| 171-313, gnl|echTel1|scaffold_213905 (11827-11689) | |
| 171-313, gnl|echTel1|scaffold_213905 (11827-11729) | |
| 171-313, gnl|fr1|chrUn (305709128-305709226) | |
| 171-313, gnl|fr1|chrUn (305709128-305709226) | |
| 171-313, gnl|galGal2|chr1 (99050387-99050553) | |
| 171-313, gnl|hg17|chr19 (57305698-57305794) | |
| 171-313, gnl|hg17|chr21 (33762965-33763103) | |
| 171-313, gnl|Hg17|chr21 (33763104-33762964) | |
| 171-313, gnl|loxAfr1|scaffold_113590 (881-1019) | |
| 171-313, gnl|loxAfr1|scaffold_113590 (881-979) | |
| 171-313, gnl|mm7|chr16 (91637289-91637427) | |
| 171-313, gnl|mm7|chr16 (91637289-91637387) | |
| 171-313, gnl|Mm7|chr16 (91637428-91637288) | |
| 171-313, gnl|monDom2|scaffold_29 (14314174-14314036) | |
| 171-313, gnl|oryCun1|scaffold_109342 (375-237) | |
| 171-313, gnl|oryCun1|scaffold_109342 (375-277) | |
| 171-313, gnl|panTro1|chr20 (54734510-54734606) | |
| 171-313, gnl|panTro1|chr22 (33739151-33739289) | |
| 171-313, gnl|rheMac2|chr19 (58171949-58172047) | |
| 171-313, gnl|rheMac2|chr3 (13085007-13084869) | |
| 171-313, gnl|rn3|chr11 (31586547-31586685) | |
| 171-313, gnl|rn3|chr11 (31586547-31586645) | |
| 171-313, gnl|tetNig1|chrUn_random (110905355-110905246) | |
| 171-313, gnl|tetNig1|chrUn_random (110905355-110905257) | |
| 635-820, gnl|bosTau2|chr1 (1195482-1195294) | |
| 635-820, gnl|canFam2|chr31 (31080321-31080653) | |
| 635-820, gnl|canFam2|chr31 (31080525-31080640) | |
| 635-820, gnl|dasNov1|scaffold_192300 (1121-1445) | |
| 635-820, gnl|dasNov1|scaffold_192300 (1292-1431) | |
| 635-820, gnl|hg17|chr19 (57305246-57305370) | |
| 635-820, gnl|hg17|chr21 (33744670-33744997) | |
| 635-820, gnl|Hg17|chr21 (33745052-33744868) | |
| 635-820, gnl|loxAfr1|scaffold_810 (152025-151708) | |
| 635-820, gnl|loxAfr1|scaffold_810 (151849-151721) | |
| 635-820, gnl|mm7|chr16 (91626163-91626461) | |
| 635-820, gnl|mm7|chr16 (91626330-91626450) | |
| 635-820, gnl|Mm7|chr16 (91626516-91626335) | |
| 635-820, gnl|monDom2|scaffold_29 (14328040-14327743) | |
| 635-820, gnl|oryCun1|scaffold_173144 (8642-8310) | |
| 635-820, gnl|oryCun1|scaffold_173144 (8447-8323) | |
| 635-820, gnl|panTro1|chr22 (33720567-33720894) | |
| 635-820, gnl|panTro1|chr22 (33720764-33720881) | |
| 635-820, gnl|rheMac2|chr19 (58171174-58171294) | |
| 635-820, gnl|rheMac2|chr3 (13103543-13103215) | |
| 635-820, gnl|rn3|chr11 (31574199-31574514) | |
| 635-820, gnl|rn3|chr11 (31574403-31574499) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cbl (0.803582) | |
| cte (0.29274) | |
| cst (0.280073) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ldo (0.0970026) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.803582) | |
| cte (0.29274) | |
| cst (0.280073) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ldo (0.0970026) |