Non-Coding RNA Search

Ss1.1-rpldo0119_m22.5

Sequence:


               
               GCGGCCGCGCCTGGCATTAAAGCTCACCTCCAAAAATGTTGGAGGAAGATATGGAAGTGG
CCATCAAGATGGTGGTGGTAGGGAACGGCGCCGTTGGAAAATCAAGTATGATTCAGCGGT
ATTGCAAAGGCATTTTTACAAAAGACTACAAGAAAACCATTGGAGTTGATTTTTTGGAGC
GACAAATCCAAGTTCACGACGAGGATGTCAGGCTGATGCTATGGGACACGGCAGGTCAGG
AGGAGTTTGACGCGATAACGAAGGCCTACTATCGAGGAGCCCAGGCTTGTGTCCTGGTAT
TTTCTACTACAGACAGGGAGTCTTTTGAAGCGATTTCCAGTTGGAGAGAGAAGGTGGTGG
CTGAGGTTGGAGATGTTCCAACTGTACTGGTGCAAAACAAGATCGATCTCCTGGATGACT
CCTGCATAAAGAACGAGGAAGCTGAGGCTCTGGCAAAGAAGTTGAAGCTGCGATTCTACA
GGACTTCAGTGAAGGAAGATCTCAATGTGAACGAAGTTTTTAAATATTTGGCTGAAAAAT
ATCTTCAAAAACTTAAACAACAAATAGCCGAGGATCCGGAATCAATGCATTCAAGTAGTA
ACAAAATTGGTGTCTTCAGCACATCGGCTGGAAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCGCCTGGCATTAAAGCTCACCTCCAAAAATGTTGGAGGAAGATATGGAAGTGG
CCATCAAGATGGTGGTGGTAGGGAACGGCGCCGTTGGAAAATCAAGTATGATTCAGCGGT
ATTGCAAAGGCATTTTTACAAAAGACTACAAGAAAACCATTGGAGTTGATTTTTTGGAGC
GACAAATCCAAGTTCACGACGAGGATGTCAGGCTGATGCTATGGGACACGGCAGGTCAGG
AGGAGTTTGACGCGATAACGAAGGCCTACTATCGAGGAGCCCAGGCTTGTGTCCTGGTAT
TTTCTACTACAGACAGGGAGTCTTTTGAAGCGATTTCCAGTTGGAGAGAGAAGGTGGTGG
CTGAGGTTGGAGATGTTCCAACTGTACTGGTGCAAAACAAGATCGATCTCCTGGATGACT
CCTGCATAAAGAACGAGGAAGCTGAGGCTCTGGCAAAGAAGTTGAAGCTGCGATTCTACA
GGACTTCAGTGAAGGAAGATCTCAATGTGAACGAAGTTTTTAAATATTTGGCTGAAAAAT
ATCTTCAAAAACTTAAACAACAAATAGCCGAGGATCCGGAATCAATGCATTCAAGTAGTA
ACAAAATTGGTGTCTTCAGCACATCGGCTGGAAGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56202673|emb|CAI21564.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56202673|emb|CAI21564.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               24-142, + strand, RNAz p=0.72957
               

               
               316-433, + strand, RNAz p=0.58968

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-142, + strand, RNAz p=0.72957
               

               
               316-433, + strand, RNAz p=0.58968

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               24-190, gnl|bosTau2|chr23 (2241570-2241404)
               

               
               24-190, gnl|canFam2|chr12 (27399747-27399599)
               

               
               24-190, gnl|danRer3|chr14 (22752286-22752143)
               

               
               24-190, gnl|dasNov1|scaffold_29805 (12745-12893)
               

               
               24-190, gnl|fr1|chrUn (83425572-83425703)
               

               
               24-190, gnl|galGal2|chr3 (85052363-85052236)
               

               
               24-190, gnl|hg17|chr6 (57182956-57183104)
               

               
               24-190, gnl|Hg17|chr6 (57183149-57182983)
               

               
               24-190, gnl|mm7|chr1 (33947092-33946946)
               

               
               24-190, gnl|Mm7|chr1 (33946899-33947065)
               

               
               24-190, gnl|monDom2|scaffold_0 (178075127-178074979)
               

               
               24-190, gnl|oryCun1|scaffold_215129 (44777-44629)
               

               
               24-190, gnl|panTro1|chr5 (58435435-58435583)
               

               
               24-190, gnl|rheMac2|chr4 (56845327-56845475)
               

               
               24-190, gnl|rn3|chr9 (32470487-32470341)
               

               
               24-190, gnl|tetNig1|chr17 (4283791-4283664)
               

               
               24-190, gnl|xenTro1|scaffold_192 (56306-56454)
               


               
               275-433, gnl|bosTau2|chr23 (2229466-2229308)
               

               
               275-433, gnl|Hg17|chr6 (57169365-57169207)
               

               
               275-433, gnl|Mm7|chr1 (33957760-33957918)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-190, gnl|bosTau2|chr23 (2241570-2241404)
               

               
               24-190, gnl|canFam2|chr12 (27399747-27399599)
               

               
               24-190, gnl|danRer3|chr14 (22752286-22752143)
               

               
               24-190, gnl|dasNov1|scaffold_29805 (12745-12893)
               

               
               24-190, gnl|fr1|chrUn (83425572-83425703)
               

               
               24-190, gnl|galGal2|chr3 (85052363-85052236)
               

               
               24-190, gnl|hg17|chr6 (57182956-57183104)
               

               
               24-190, gnl|Hg17|chr6 (57183149-57182983)
               

               
               24-190, gnl|mm7|chr1 (33947092-33946946)
               

               
               24-190, gnl|Mm7|chr1 (33946899-33947065)
               

               
               24-190, gnl|monDom2|scaffold_0 (178075127-178074979)
               

               
               24-190, gnl|oryCun1|scaffold_215129 (44777-44629)
               

               
               24-190, gnl|panTro1|chr5 (58435435-58435583)
               

               
               24-190, gnl|rheMac2|chr4 (56845327-56845475)
               

               
               24-190, gnl|rn3|chr9 (32470487-32470341)
               

               
               24-190, gnl|tetNig1|chr17 (4283791-4283664)
               

               
               24-190, gnl|xenTro1|scaffold_192 (56306-56454)
               


               
               275-433, gnl|bosTau2|chr23 (2229466-2229308)
               

               
               275-433, gnl|Hg17|chr6 (57169365-57169207)
               

               
               275-433, gnl|Mm7|chr1 (33957760-33957918)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	24-142, + strand, RNAz p=0.72957
	316-433, + strand, RNAz p=0.58968

	24-190, gnl\|bosTau2\|chr23 (2241570-2241404)
	24-190, gnl\|canFam2\|chr12 (27399747-27399599)
	24-190, gnl\|danRer3\|chr14 (22752286-22752143)
	24-190, gnl\|dasNov1\|scaffold_29805 (12745-12893)
	24-190, gnl\|fr1\|chrUn (83425572-83425703)
	24-190, gnl\|galGal2\|chr3 (85052363-85052236)
	24-190, gnl\|hg17\|chr6 (57182956-57183104)
	24-190, gnl\|Hg17\|chr6 (57183149-57182983)
	24-190, gnl\|mm7\|chr1 (33947092-33946946)
	24-190, gnl\|Mm7\|chr1 (33946899-33947065)
	24-190, gnl\|monDom2\|scaffold_0 (178075127-178074979)
	24-190, gnl\|oryCun1\|scaffold_215129 (44777-44629)
	24-190, gnl\|panTro1\|chr5 (58435435-58435583)
	24-190, gnl\|rheMac2\|chr4 (56845327-56845475)
	24-190, gnl\|rn3\|chr9 (32470487-32470341)
	24-190, gnl\|tetNig1\|chr17 (4283791-4283664)
	24-190, gnl\|xenTro1\|scaffold_192 (56306-56454)

	275-433, gnl\|bosTau2\|chr23 (2229466-2229308)
	275-433, gnl\|Hg17\|chr6 (57169365-57169207)
	275-433, gnl\|Mm7\|chr1 (33957760-33957918)