Non-Coding RNA Search

Ss1.1-rpldo0120_a24.5

Sequence:


               
               TCAGCAAATGGTGCAGGCTCTCGCTGGAGCAAATCCTCCGCAGCTGCCGAATCCAGAAGT
CAGATTTCAGCAACAACTGGAACAGCTCAACGCAATGGGGTTCTTAAACCGGGAAGCAAA
CTTGCAGGCTCTAATAGCAACAGGAGGCGACATCAACGCAGCCATTGAAAGGCTGCTGGG
CTCCCAGCCATCGTAATTATACTTCTGTACCTTGAAAAAATGTATCTTATTTTTGATAAT
GGCTCTTAAATCTTTAAACACACAGAATTGTGCTTTACTTTCATTTTGATTCCTTTAAAT
CTGTCTAGTTATAAATCTAATATGCATTTTAAGGTGGAGTCTTTTCCTCCCTCTTTGTTT
CCTTCCTCCCTTCCTCCTTCTCTCTTCCCTCCCTTCTTGCCTTCCTTCTCTGTTTTGAAT
GGTGGGAATCAATGCTGTTTCACTCAAAGGTGTTGCATGCAAACACTTCTTTATTCTGCA
TTTATTGTGATTTTTGAGAACTGGTATCAACCTTTACGGTTGGGTGAACAAGTTTTGTCC
TACAGATGTCCAATTTATTTGCATTTTAAACATTAGACTATGATAGTAATTTAATGTAGA
CTGAAAATATTAAAAGCAGAAACAAATTATTTGAAACTCTAATTTGTGGTACAATATTGC
TTATTGTGACTTTGGCATGTATTTTTGCTAGCAAAATGCTGTAAGATTTATACCATTCTT
TGATCTTTTTTGCTATATTTATATGCAGTACAGTAAGCACAATTGGAACTGTATACCTAG
AAATGTTACAACAGAATCTCTGAGCAGAATATATATAACCAAAATGAGAGAGACTATAAG
AAATATTTCTGGAGCTTGATGTATTTCACAATTTTGTAGAATCTTACAGCATCTTTGATA
AACTTCTCAGTGAAAATGTTGGCTAGGCAAGTTCAGTTAAAATATAGTAGAAATGTTTAT
CCTGGTATCTCTTAAGTATACATTTAATTGTACAGAAAACTTACAGTGTGGCATTGTGTC
AACATTTGCAAATTGATTGTATATGATCTTAATCTTAGTGCAGCCTGAAGGATCAGTATA
GTAATGCCAGGAAAGTGCTTTTTTACCTGAGAATTCCTTCTCAGCTTCTTTTAAGAGACC
CTAATACGCATTTTGATTTGTAATTGGAAATGTAACTTTCACTGAAAGTGTCATGTGACG
TTTGCATTACTTTTAACTGCTGTGTATAAAGGAAACTGTATCTTTTGAGTCTATCAGTTA
TTTCTCTTGTGCACAGGGAAAAATGCATTAAAATGACTAAAAAAATAAAAAAAATTAAAA
ATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCAAATGGTGCAGGCTCTCGCTGGAGCAAATCCTCCGCAGCTGCCGAATCCAGAAGT
CAGATTTCAGCAACAACTGGAACAGCTCAACGCAATGGGGTTCTTAAACCGGGAAGCAAA
CTTGCAGGCTCTAATAGCAACAGGAGGCGACATCAACGCAGCCATTGAAAGGCTGCTGGG
CTCCCAGCCATCGTAATTATACTTCTGTACCTTGAAAAAATGTATCTTATTTTTGATAAT
GGCTCTTAAATCTTTAAACACACAGAATTGTGCTTTACTTTCATTTTGATTCCTTTAAAT
CTGTCTAGTTATAAATCTAATATGCATTTTAAGGTGGAGTCTTTTCCTCCCTCTTTGTTT
CCTTCCTCCCTTCCTCCTTCTCTCTTCCCTCCCTTCTTGCCTTCCTTCTCTGTTTTGAAT
GGTGGGAATCAATGCTGTTTCACTCAAAGGTGTTGCATGCAAACACTTCTTTATTCTGCA
TTTATTGTGATTTTTGAGAACTGGTATCAACCTTTACGGTTGGGTGAACAAGTTTTGTCC
TACAGATGTCCAATTTATTTGCATTTTAAACATTAGACTATGATAGTAATTTAATGTAGA
CTGAAAATATTAAAAGCAGAAACAAATTATTTGAAACTCTAATTTGTGGTACAATATTGC
TTATTGTGACTTTGGCATGTATTTTTGCTAGCAAAATGCTGTAAGATTTATACCATTCTT
TGATCTTTTTTGCTATATTTATATGCAGTACAGTAAGCACAATTGGAACTGTATACCTAG
AAATGTTACAACAGAATCTCTGAGCAGAATATATATAACCAAAATGAGAGAGACTATAAG
AAATATTTCTGGAGCTTGATGTATTTCACAATTTTGTAGAATCTTACAGCATCTTTGATA
AACTTCTCAGTGAAAATGTTGGCTAGGCAAGTTCAGTTAAAATATAGTAGAAATGTTTAT
CCTGGTATCTCTTAAGTATACATTTAATTGTACAGAAAACTTACAGTGTGGCATTGTGTC
AACATTTGCAAATTGATTGTATATGATCTTAATCTTAGTGCAGCCTGAAGGATCAGTATA
GTAATGCCAGGAAAGTGCTTTTTTACCTGAGAATTCCTTCTCAGCTTCTTTTAAGAGACC
CTAATACGCATTTTGATTTGTAATTGGAAATGTAACTTTCACTGAAAGTGTCATGTGACG
TTTGCATTACTTTTAACTGCTGTGTATAAAGGAAACTGTATCTTTTGAGTCTATCAGTTA
TTTCTCTTGTGCACAGGGAAAAATGCATTAAAATGACTAAAAAAATAAAAAAAATTAAAA
ATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               83-315, gnl|bosTau2|chr25 (11026951-11026727)
               

               
               83-315, gnl|Hg17|chr9 (83506369-83506146)
               

               
               83-315, gnl|Mm7|chr13 (57272464-57272248)
               


               
               928-1304, gnl|bosTau2|chr11 (44578520-44578905)
               

               
               928-1304, gnl|Hg17|chrX (56476011-56476379)
               

               
               928-1304, gnl|Mm7|chrX (148259855-148260218)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-315, gnl|bosTau2|chr25 (11026951-11026727)
               

               
               83-315, gnl|Hg17|chr9 (83506369-83506146)
               

               
               83-315, gnl|Mm7|chr13 (57272464-57272248)
               


               
               928-1304, gnl|bosTau2|chr11 (44578520-44578905)
               

               
               928-1304, gnl|Hg17|chrX (56476011-56476379)
               

               
               928-1304, gnl|Mm7|chrX (148259855-148260218)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               vin (0.997672)
               

               
               fco (0.471624)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.997672)
               

               
               fco (0.471624)
               

               
               fcc (0.39557)
               

               
               ret (0.3862)
               

               
               tbr (0.308356)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               ldo (0.0970026)

	83-315, gnl\|bosTau2\|chr25 (11026951-11026727)
	83-315, gnl\|Hg17\|chr9 (83506369-83506146)
	83-315, gnl\|Mm7\|chr13 (57272464-57272248)

	928-1304, gnl\|bosTau2\|chr11 (44578520-44578905)
	928-1304, gnl\|Hg17\|chrX (56476011-56476379)
	928-1304, gnl\|Mm7\|chrX (148259855-148260218)

	vin (0.997672)
	fco (0.471624)
	fcc (0.39557)
	ret (0.3862)
	tbr (0.308356)
	bfe (0.299715)
	lin (0.291206)
	spl (0.286369)
	fce (0.271592)
	tra (0.246184)
	mgp (0.230681)
	aor (0.195274)
	nco (0.161734)
	mga (0.160205)
	isp (0.150376)
	fat (0.147427)
	liv (0.146284)
	ssp (0.13552)
	pla (0.133672)
	kid (0.129735)
	ova (0.129132)
	pgl (0.118483)
	ldo (0.0970026)