Non-Coding RNA Search

Ss1.1-rpldo0121_a1.5

Sequence:


               
               CAGGCCGCCAGCCAGATGTGGGGCGGAAGGACTGGGGCCTTGCTCCGGTTGTCAAGGCTG
TGGCCAACAGGCCTCCTCTGGAGAGGACCGCTAAACTGCAATGTTGTGTCGCTGGCAGGA
AGCAACTCCCCCCGGTGTTGGAACTGCGGCGGCCTAGGGGGCCCCCTGCGAGGAGACCAG
TTCTTCTGCCCTCAGTGCCGTGCGCTGCAGCCACCTGACCCCGCTCGAGACTACTTCAGC
CTCATGGACTGCAACCACTCTTTCAGAGTTGACACTTCAAAGCTCCAGCATAGGTACCAA
GAACTACAGCGTCTTGTCCACCCAGATTTCTTCAGCCAGAGATCTCAGACTGAAAAGGAC
TTCTCAGAGAAACATTCGACCCTCGTAAATGATGCCTATAAGACCCTTCTGGCCCCCCTG
AGCAGGGGACTATACCTTCTAAAGCTCCATGGAATAGAGATTCCTGAAGGGACAGATCAT
GAAATGGACAGCCAGTTCCTCATGGAAATAATGGAAATCAATGAAAAACTTGCAGAGGCT
CAAAGTGAAACTGCCATGAATGAGATTGAATCTGTTGTCCGAGCTAAACAGAAAGAATTG
ACTGACAATGTGAGCAGAGCTTTTGAAAGAGATGATTTTGAAAAAGCCAAGGAACTTTTA
ACAAAGATGAGATACTTTTCAAACATTGAAGAAAAGATTAAGTTAAAGAAGATTCCTCTC
TAATGGTTGCTAATTTTAAAGTTTTAAAAAATAAAGTTCTTAATATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCCGCCAGCCAGATGTGGGGCGGAAGGACTGGGGCCTTGCTCCGGTTGTCAAGGCTG
TGGCCAACAGGCCTCCTCTGGAGAGGACCGCTAAACTGCAATGTTGTGTCGCTGGCAGGA
AGCAACTCCCCCCGGTGTTGGAACTGCGGCGGCCTAGGGGGCCCCCTGCGAGGAGACCAG
TTCTTCTGCCCTCAGTGCCGTGCGCTGCAGCCACCTGACCCCGCTCGAGACTACTTCAGC
CTCATGGACTGCAACCACTCTTTCAGAGTTGACACTTCAAAGCTCCAGCATAGGTACCAA
GAACTACAGCGTCTTGTCCACCCAGATTTCTTCAGCCAGAGATCTCAGACTGAAAAGGAC
TTCTCAGAGAAACATTCGACCCTCGTAAATGATGCCTATAAGACCCTTCTGGCCCCCCTG
AGCAGGGGACTATACCTTCTAAAGCTCCATGGAATAGAGATTCCTGAAGGGACAGATCAT
GAAATGGACAGCCAGTTCCTCATGGAAATAATGGAAATCAATGAAAAACTTGCAGAGGCT
CAAAGTGAAACTGCCATGAATGAGATTGAATCTGTTGTCCGAGCTAAACAGAAAGAATTG
ACTGACAATGTGAGCAGAGCTTTTGAAAGAGATGATTTTGAAAAAGCCAAGGAACTTTTA
ACAAAGATGAGATACTTTTCAAACATTGAAGAAAAGATTAAGTTAAAGAAGATTCCTCTC
TAATGGTTGCTAATTTTAAAGTTTTAAAAAATAAAGTTCTTAATATAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|41388876|gb|AAH65569.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41388876|gb|AAH65569.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               630-760, gnl|bosTau2|chr17 (41326027-41326157)
               

               
               630-760, gnl|Hg17|chr22 (27477618-27478056)
               

               
               630-760, gnl|Mm7|chr5 (109995421-109995295)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               630-760, gnl|bosTau2|chr17 (41326027-41326157)
               

               
               630-760, gnl|Hg17|chr22 (27477618-27478056)
               

               
               630-760, gnl|Mm7|chr5 (109995421-109995295)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               ese (0.379507)
               

               
               cmu (0.372787)
               

               
               pgl (0.35545)
               

               
               cte (0.29274)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               cki (0.165235)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.379507)
               

               
               cmu (0.372787)
               

               
               pgl (0.35545)
               

               
               cte (0.29274)
               

               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               cki (0.165235)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	630-760, gnl\|bosTau2\|chr17 (41326027-41326157)
	630-760, gnl\|Hg17\|chr22 (27477618-27478056)
	630-760, gnl\|Mm7\|chr5 (109995421-109995295)

	ese (0.379507)
	cmu (0.372787)
	pgl (0.35545)
	cte (0.29274)
	mgp (0.230681)
	mas (0.210305)
	nep (0.183925)
	cki (0.165235)
	csk (0.140746)
	hlv (0.139256)
	ste (0.135208)
	eep (0.122564)
	ebs (0.118301)
	ldo (0.0970026)