Ss1.1-rpldo0121_l9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTTTAGAAAAGACCCATTTTTGTGGAGGGCTGCCCTCCTCTACTACACTGTTTATCAA GCCAGCCAAATGTCTTTTTGTGAACTCTTCAAAGATATTGGAAGGTTTGTCAAGGACCCC AATACAAGATGGGATTATTGTGTACGAGCCAAGAGGGGATGGACTGATACCTCGAAGCCA GGGTGTTTCAGTAAGGACCAGGTATACTTGGATGGTATCCTGCAAATACTCCGATATAGA GAGACCATTGACTTTCATCTGCTAACTGCCCTTGGGAAGGTCTCTTACGAAGATGTGGAT CGCTTAAAAGGATTGGCAGTTACTGAAAACATGAGGGTCCCTCACTTTCTGCAAGACCAT GGCCGGTACATGGAACACTTAGAGAAGATCATGGAAGTGAATGAACTGACCGACAGGGAA CTGAAAGATCTTATATAGTAATTAGCATTCTTGCAGACATAGCTAAGGTATACCTCTATG TATACTACCAATTAGGTGCATCTAGCACCAGCGGATTTATAAAAGAGGAATGACTGTTTA CATGAGTTTTCTGAAGAATGATCTGCAGTATTCAGCTGAATATTTAGGTTGAGAACAAAC CTTAAACGGTTTCCCTACAATAGGCTGCAGGGGAAGTTACTCCTATTTTCATCTGAATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTTTAGAAAAGACCCATTTTTGTGGAGGGCTGCCCTCCTCTACTACACTGTTTATCAA GCCAGCCAAATGTCTTTTTGTGAACTCTTCAAAGATATTGGAAGGTTTGTCAAGGACCCC AATACAAGATGGGATTATTGTGTACGAGCCAAGAGGGGATGGACTGATACCTCGAAGCCA GGGTGTTTCAGTAAGGACCAGGTATACTTGGATGGTATCCTGCAAATACTCCGATATAGA GAGACCATTGACTTTCATCTGCTAACTGCCCTTGGGAAGGTCTCTTACGAAGATGTGGAT CGCTTAAAAGGATTGGCAGTTACTGAAAACATGAGGGTCCCTCACTTTCTGCAAGACCAT GGCCGGTACATGGAACACTTAGAGAAGATCATGGAAGTGAATGAACTGACCGACAGGGAA CTGAAAGATCTTATATAGTAATTAGCATTCTTGCAGACATAGCTAAGGTATACCTCTATG TATACTACCAATTAGGTGCATCTAGCACCAGCGGATTTATAAAAGAGGAATGACTGTTTA CATGAGTTTTCTGAAGAATGATCTGCAGTATTCAGCTGAATATTTAGGTTGAGAACAAAC CTTAAACGGTTTCCCTACAATAGGCTGCAGGGGAAGTTACTCCTATTTTCATCTGAATCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 397-627, - strand, RNAz p=0.542852 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 397-627, - strand, RNAz p=0.542852 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-182, gnl|bosTau2|chr4 (34213732-34213551) | |
| 1-182, gnl|canFam2|chr14 (50720399-50720534) | |
| 1-182, gnl|danRer3|chr19 (26382792-26382920) | |
| 1-182, gnl|dasNov1|scaffold_91626 (4019-3884) | |
| 1-182, gnl|echTel1|scaffold_286259 (5645-5509) | |
| 1-182, gnl|fr1|chrUn (39809535-39809407) | |
| 1-182, gnl|galGal2|chr2 (45880912-45880780) | |
| 1-182, gnl|hg17|chr7 (36146697-36146832) | |
| 1-182, gnl|Hg17|chr7 (36146885-36146704) | |
| 1-182, gnl|loxAfr1|scaffold_22303 (56653-56787) | |
| 1-182, gnl|mm7|chr9 (22314223-22314088) | |
| 1-182, gnl|Mm7|chr9 (22314033-22314214) | |
| 1-182, gnl|monDom2|scaffold_215 (605068-605203) | |
| 1-182, gnl|oryCun1|scaffold_62641 (509-376) | |
| 1-182, gnl|panTro1|chr6 (37312636-37312771) | |
| 1-182, gnl|rheMac2|chr3 (89897751-89897616) | |
| 1-182, gnl|rn3|chr8 (21764162-21764027) | |
| 1-182, gnl|tetNig1|chrUn_random (10409536-10409403) | |
| 1-182, gnl|xenTro1|scaffold_219 (836491-836626) | |
| 278-660, gnl|bosTau2|chr4 (34193192-34192801) | |
| 278-660, gnl|Hg17|chr7 (36139769-36139385) | |
| 278-660, gnl|Mm7|chr9 (22322883-22323247) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-182, gnl|bosTau2|chr4 (34213732-34213551) | |
| 1-182, gnl|canFam2|chr14 (50720399-50720534) | |
| 1-182, gnl|danRer3|chr19 (26382792-26382920) | |
| 1-182, gnl|dasNov1|scaffold_91626 (4019-3884) | |
| 1-182, gnl|echTel1|scaffold_286259 (5645-5509) | |
| 1-182, gnl|fr1|chrUn (39809535-39809407) | |
| 1-182, gnl|galGal2|chr2 (45880912-45880780) | |
| 1-182, gnl|hg17|chr7 (36146697-36146832) | |
| 1-182, gnl|Hg17|chr7 (36146885-36146704) | |
| 1-182, gnl|loxAfr1|scaffold_22303 (56653-56787) | |
| 1-182, gnl|mm7|chr9 (22314223-22314088) | |
| 1-182, gnl|Mm7|chr9 (22314033-22314214) | |
| 1-182, gnl|monDom2|scaffold_215 (605068-605203) | |
| 1-182, gnl|oryCun1|scaffold_62641 (509-376) | |
| 1-182, gnl|panTro1|chr6 (37312636-37312771) | |
| 1-182, gnl|rheMac2|chr3 (89897751-89897616) | |
| 1-182, gnl|rn3|chr8 (21764162-21764027) | |
| 1-182, gnl|tetNig1|chrUn_random (10409536-10409403) | |
| 1-182, gnl|xenTro1|scaffold_219 (836491-836626) | |
| 278-660, gnl|bosTau2|chr4 (34193192-34192801) | |
| 278-660, gnl|Hg17|chr7 (36139769-36139385) | |
| 278-660, gnl|Mm7|chr9 (22322883-22323247) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| ldo (0.0970026) |