Ss1.1-rpldo0121_m21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATAGCCATCCTTGGCTCAGCGGGAATGACCTGCCTGACAGTGCTCTTGGCCTTTCTGAT CATGTTGCAGTTGAAGAGGGCAAATGTCCAAAGGAGAATGGCCCAAGCCTTCCAAAATGT GAGGGAAGAACCAGCTGTGCAGTTCAACTCAGGAACTCTGGCCCTGAACAGGAAGGCCAA AAACAACCCAGATCCTACAATTTATCCAGTGCTTGACTGGAATGACATCAAATTTCAAGA TGTGATTGGGGAGGGTAATTTTGGCCAGGTCCTTAAGGCTCGCATCAAGAAGGATGGGTT AAGGATGGACGCTGCCATCAAGAGAATGAAAGAATATGCTTCCAAGGACGACCACAGGGA CTTTGCAGGGGAACTAGAGGTTCTTTGTAAACTTGGACACCACCCAAATATCATCAATCT CTTGGGAGCGTGTGAACATCGTGGCTACTTGTACCTGGCCATTGAGTACGCCCCCCATGG GAATCTCCTGGACTTCCTGCGCAAGAGCCGAGTGCTAGAGACGGACCCTGCGTTCGCCAT AGCCAACAGCACCGCCTCCACGCTGTCCTCCCAGCAGCTTCTCCATTTTGCAGCAGATGT GGCCCGTGGAATGGACTACTTGAGCCAAAAACAGTTTATCCACAGGGACCTGGCCGCCAG GAACATTTTAGTTGGTGAAAACTATGTAGCCAAAATAGCAGACTTTGGATTGTCCCGAGG TCAAGAAGTGTATGTGAAAAAGACAATGGGAAGGCTCCCTGTGCGCTGGATGGCGATCGA GTCACTAAATTACAGCGTGTATACAACCAACAGCGACGTATGGTCCTATGGAGTATTACT GTGGGAGATTGTTAGCTTAGGTGGCACCCCTTACTGTGGGATGACGTGTGCAGAACTCTA TGAAAAGCTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATAGCCATCCTTGGCTCAGCGGGAATGACCTGCCTGACAGTGCTCTTGGCCTTTCTGAT CATGTTGCAGTTGAAGAGGGCAAATGTCCAAAGGAGAATGGCCCAAGCCTTCCAAAATGT GAGGGAAGAACCAGCTGTGCAGTTCAACTCAGGAACTCTGGCCCTGAACAGGAAGGCCAA AAACAACCCAGATCCTACAATTTATCCAGTGCTTGACTGGAATGACATCAAATTTCAAGA TGTGATTGGGGAGGGTAATTTTGGCCAGGTCCTTAAGGCTCGCATCAAGAAGGATGGGTT AAGGATGGACGCTGCCATCAAGAGAATGAAAGAATATGCTTCCAAGGACGACCACAGGGA CTTTGCAGGGGAACTAGAGGTTCTTTGTAAACTTGGACACCACCCAAATATCATCAATCT CTTGGGAGCGTGTGAACATCGTGGCTACTTGTACCTGGCCATTGAGTACGCCCCCCATGG GAATCTCCTGGACTTCCTGCGCAAGAGCCGAGTGCTAGAGACGGACCCTGCGTTCGCCAT AGCCAACAGCACCGCCTCCACGCTGTCCTCCCAGCAGCTTCTCCATTTTGCAGCAGATGT GGCCCGTGGAATGGACTACTTGAGCCAAAAACAGTTTATCCACAGGGACCTGGCCGCCAG GAACATTTTAGTTGGTGAAAACTATGTAGCCAAAATAGCAGACTTTGGATTGTCCCGAGG TCAAGAAGTGTATGTGAAAAAGACAATGGGAAGGCTCCCTGTGCGCTGGATGGCGATCGA GTCACTAAATTACAGCGTGTATACAACCAACAGCGACGTATGGTCCTATGGAGTATTACT GTGGGAGATTGTTAGCTTAGGTGGCACCCCTTACTGTGGGATGACGTGTGCAGAACTCTA TGAAAAGCTGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 160-279, + strand, RNAz p=0.990749 | |
| 220-332, - strand, RNAz p=0.585717 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-279, + strand, RNAz p=0.990749 | |
| 220-332, - strand, RNAz p=0.585717 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 121-332, gnl|bosTau2|chr8 (10412330-10412119) | |
| 121-332, gnl|canFam2|chr11 (48391831-48392008) | |
| 121-332, gnl|danRer3|chrUn (16991681-16991855) | |
| 121-332, gnl|dasNov1|scaffold_6598 (116798-116622) | |
| 121-332, gnl|echTel1|scaffold_310577 (17756-17592) | |
| 121-332, gnl|fr1|chrUn (115968879-115969048) | |
| 121-332, gnl|galGal2|chrZ_random (2694173-2694363) | |
| 121-332, gnl|hg17|chr9 (27196567-27196743) | |
| 121-332, gnl|Hg17|chr9 (27196579-27196790) | |
| 121-332, gnl|loxAfr1|scaffold_62621 (9715-9539) | |
| 121-332, gnl|mm7|chr4 (94245958-94246138) | |
| 121-332, gnl|Mm7|chr4 (94245974-94246185) | |
| 121-332, gnl|monDom2|scaffold_19 (25056394-25056565) | |
| 121-332, gnl|oryCun1|scaffold_213633 (51837-52017) | |
| 121-332, gnl|panTro1|chr11 (27728113-27728289) | |
| 121-332, gnl|rheMac2|chr15 (49885248-49885072) | |
| 121-332, gnl|rn3|chr5 (115174776-115174956) | |
| 121-332, gnl|tetNig1|chr1 (16282621-16282789) | |
| 121-332, gnl|xenTro1|scaffold_155 (827789-827618) | |
| 443-637, gnl|bosTau2|chr8 (10407549-10407355) | |
| 443-637, gnl|Hg17|chr9 (27202704-27202898) | |
| 443-637, gnl|Mm7|chr4 (94251493-94251687) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-332, gnl|bosTau2|chr8 (10412330-10412119) | |
| 121-332, gnl|canFam2|chr11 (48391831-48392008) | |
| 121-332, gnl|danRer3|chrUn (16991681-16991855) | |
| 121-332, gnl|dasNov1|scaffold_6598 (116798-116622) | |
| 121-332, gnl|echTel1|scaffold_310577 (17756-17592) | |
| 121-332, gnl|fr1|chrUn (115968879-115969048) | |
| 121-332, gnl|galGal2|chrZ_random (2694173-2694363) | |
| 121-332, gnl|hg17|chr9 (27196567-27196743) | |
| 121-332, gnl|Hg17|chr9 (27196579-27196790) | |
| 121-332, gnl|loxAfr1|scaffold_62621 (9715-9539) | |
| 121-332, gnl|mm7|chr4 (94245958-94246138) | |
| 121-332, gnl|Mm7|chr4 (94245974-94246185) | |
| 121-332, gnl|monDom2|scaffold_19 (25056394-25056565) | |
| 121-332, gnl|oryCun1|scaffold_213633 (51837-52017) | |
| 121-332, gnl|panTro1|chr11 (27728113-27728289) | |
| 121-332, gnl|rheMac2|chr15 (49885248-49885072) | |
| 121-332, gnl|rn3|chr5 (115174776-115174956) | |
| 121-332, gnl|tetNig1|chr1 (16282621-16282789) | |
| 121-332, gnl|xenTro1|scaffold_155 (827789-827618) | |
| 443-637, gnl|bosTau2|chr8 (10407549-10407355) | |
| 443-637, gnl|Hg17|chr9 (27202704-27202898) | |
| 443-637, gnl|Mm7|chr4 (94251493-94251687) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csk (0.281492) | |
| ldo (0.0970026) |