Non-Coding RNA Search

Ss1.1-rpldo0122_c20.5

Sequence:


               
               ACTTTCCCAAGTGTCTCTGCATCGCTGCCACATCTATGGTACAGCCTGTGCTGACTGCTG
CCTGGCAAGGGACCCTTACTGTGCCTGGGATGGCCATTCTTGCTCTAGGTTCTACCCAAC
TGGGAAGCGGAGGAGCCGAAGACAAGATGTAAGACACGGAAATCCATTGACTCAATGCAG
AGGATTTAATCTAAAAGCATATAGAAATGCAGCTGAACTTGTTCAGTATGGAGTAAAAAA
TAATACCACTTTCCTTGAGTGTGCCCCTAAGTCTCCACAGGCATCTATCAAGTGGTTGTT
ACAGAAAGACAAAGACAGGAGGAAAGAGGTCAAGCTGAATGAAAGAATCATAGCCACTGC
ACAAGGACTCCTGATCCGCTCTGTTCAGGATTCTGACCAAGGACTGTATCACTGCATTGC
AACTGAAAACAGCTTCAAGCAGACCATAGCCAAGATCAACTTTAAAGTTTTAGATTCTGA
AATGGTGGCTGTTGTGACAGACAAATGGTCTCCATGGACCTGGGCCAGCTCTGTGAGGGC
TTTACCCTTCCATCCAAAGGACATCATGGGGGCATTCAGCCACTCAGAAATGCAGATGAT
TAATCAGTACTGCAAAGACACTCGGCAGCAACATCAACAAGGAGGAGAATCCCAAAAGAT
GAGAGGAGACTATGGCAAATTAAAGGCTCTCATTAATAGTCGAAAAAGTAGAAATAGAAG
GAATCAGCTGCCAGAATCATAATGTTTTCTTAAATGGGGCTTATGCTTCCATTAGTAAAT
GGCCTGTCTTCGATGATTAAATTTTGAACAAAGAATCTTATGCTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTCCCAAGTGTCTCTGCATCGCTGCCACATCTATGGTACAGCCTGTGCTGACTGCTG
CCTGGCAAGGGACCCTTACTGTGCCTGGGATGGCCATTCTTGCTCTAGGTTCTACCCAAC
TGGGAAGCGGAGGAGCCGAAGACAAGATGTAAGACACGGAAATCCATTGACTCAATGCAG
AGGATTTAATCTAAAAGCATATAGAAATGCAGCTGAACTTGTTCAGTATGGAGTAAAAAA
TAATACCACTTTCCTTGAGTGTGCCCCTAAGTCTCCACAGGCATCTATCAAGTGGTTGTT
ACAGAAAGACAAAGACAGGAGGAAAGAGGTCAAGCTGAATGAAAGAATCATAGCCACTGC
ACAAGGACTCCTGATCCGCTCTGTTCAGGATTCTGACCAAGGACTGTATCACTGCATTGC
AACTGAAAACAGCTTCAAGCAGACCATAGCCAAGATCAACTTTAAAGTTTTAGATTCTGA
AATGGTGGCTGTTGTGACAGACAAATGGTCTCCATGGACCTGGGCCAGCTCTGTGAGGGC
TTTACCCTTCCATCCAAAGGACATCATGGGGGCATTCAGCCACTCAGAAATGCAGATGAT
TAATCAGTACTGCAAAGACACTCGGCAGCAACATCAACAAGGAGGAGAATCCCAAAAGAT
GAGAGGAGACTATGGCAAATTAAAGGCTCTCATTAATAGTCGAAAAAGTAGAAATAGAAG
GAATCAGCTGCCAGAATCATAATGTTTTCTTAAATGGGGCTTATGCTTCCATTAGTAAAT
GGCCTGTCTTCGATGATTAAATTTTGAACAAAGAATCTTATGCTTTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812181|ref|XP_596945.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812181|ref|XP_596945.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-130, gnl|bosTau2|chr4 (15015237-15015108)
               

               
               1-130, gnl|Hg17|chr7 (80032426-80032297)
               

               
               1-130, gnl|Mm7|chr5 (16730459-16730588)
               


               
               327-828, gnl|bosTau2|chr4 (14999780-14999280)
               

               
               327-828, gnl|Hg17|chr7 (80019276-80018775)
               

               
               327-828, gnl|Mm7|chr5 (16740860-16741358)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-130, gnl|bosTau2|chr4 (15015237-15015108)
               

               
               1-130, gnl|Hg17|chr7 (80032426-80032297)
               

               
               1-130, gnl|Mm7|chr5 (16730459-16730588)
               


               
               327-828, gnl|bosTau2|chr4 (14999780-14999280)
               

               
               327-828, gnl|Hg17|chr7 (80019276-80018775)
               

               
               327-828, gnl|Mm7|chr5 (16740860-16741358)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mas (0.210305)
               

               
               cst (0.140036)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               cst (0.140036)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	1-130, gnl\|bosTau2\|chr4 (15015237-15015108)
	1-130, gnl\|Hg17\|chr7 (80032426-80032297)
	1-130, gnl\|Mm7\|chr5 (16730459-16730588)

	327-828, gnl\|bosTau2\|chr4 (14999780-14999280)
	327-828, gnl\|Hg17\|chr7 (80019276-80018775)
	327-828, gnl\|Mm7\|chr5 (16740860-16741358)