Non-Coding RNA Search

Ss1.1-rpldo0123_d11.5

Sequence:


               
               CCGGCTTCCTTTCCAAGGATGAATGGCCCTGTAAGCAAGACTTTGGTCCCATTTCCTAGA
GTGGGGAGCCTGCCTGGCACAAACCCAGCTGCTTTCCCGAGACCTGGAGGTCCAATGGCT
GCAGTGTACCCAAATGGAATGTTACCCCCTTAAATACCATTTTCTCTCCAGGACCACCTT
GGTTTCCAGGCACCGTGGTTCTGGGCAGGGCTGTGTTTTAAGTGAAAGGGTAGATAGGGA
GCTACAGTCTGAAGTACATAGCTGGGGCTCAAGTTCAAATGACCCGCCCCCCCGACCCCC
CAATGCTTCTTTCTTGACTGAAGGTGAAATGTTTGTTACCTATGGGACATGGACTTTGGC
AGATGGGAGTGATCCTGCCTTGAAAGAGAATCTCCAGCCTTCCAGAGCCTGCTGTGCTTT
TATCCCACAGCTTTCTGCCCATTGTTTCTTACTAGTTTCTTGAATTGTTCTTGTGGACTC
TTCCTCAGGGATACATTGGCCTGCAGGTCCCAATTCATATGTAGTCCCCTGCTCACCACT
GGAGAATCAGCCCACTGCTTTCTAGAAATGTTGCGTTGGTGAACGGACCATGCTTCAGTA
GCGCCGACTGGTCATCATCTACTGCCATACCTTCCCCTGGGGGCTTGAACACAGAACAGG
GAGGTGGGTAAACTACTTCCGAGACCCACCAAATACAGTTTTTGCTTGACTGACTGGGAC
TACAGCTTCCTTCTCCTGGGACTAAGAGGAGGCCAGAGTCAAGGCCCCACTGATCATCCA
ATTCCTTCTCCACTGGTACTCCCAAATCGAAGAACCTCAAAAATTTAAACTGAAGTGGAT
GGGACTGGGGAATGGGGTAGGGGGGGTGGGGGAAGGAAGGGGAGAAATCACTGTGCTTTG
TTCAGCCTGATGTGAAAGGATGGTTGGTGTTTTTCCTGCATTGTATCTTTTCTTACTGTT
TCTTTAATAAATGGGATGAGGGGGCTGTTCAGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCTTCCTTTCCAAGGATGAATGGCCCTGTAAGCAAGACTTTGGTCCCATTTCCTAGA
GTGGGGAGCCTGCCTGGCACAAACCCAGCTGCTTTCCCGAGACCTGGAGGTCCAATGGCT
GCAGTGTACCCAAATGGAATGTTACCCCCTTAAATACCATTTTCTCTCCAGGACCACCTT
GGTTTCCAGGCACCGTGGTTCTGGGCAGGGCTGTGTTTTAAGTGAAAGGGTAGATAGGGA
GCTACAGTCTGAAGTACATAGCTGGGGCTCAAGTTCAAATGACCCGCCCCCCCGACCCCC
CAATGCTTCTTTCTTGACTGAAGGTGAAATGTTTGTTACCTATGGGACATGGACTTTGGC
AGATGGGAGTGATCCTGCCTTGAAAGAGAATCTCCAGCCTTCCAGAGCCTGCTGTGCTTT
TATCCCACAGCTTTCTGCCCATTGTTTCTTACTAGTTTCTTGAATTGTTCTTGTGGACTC
TTCCTCAGGGATACATTGGCCTGCAGGTCCCAATTCATATGTAGTCCCCTGCTCACCACT
GGAGAATCAGCCCACTGCTTTCTAGAAATGTTGCGTTGGTGAACGGACCATGCTTCAGTA
GCGCCGACTGGTCATCATCTACTGCCATACCTTCCCCTGGGGGCTTGAACACAGAACAGG
GAGGTGGGTAAACTACTTCCGAGACCCACCAAATACAGTTTTTGCTTGACTGACTGGGAC
TACAGCTTCCTTCTCCTGGGACTAAGAGGAGGCCAGAGTCAAGGCCCCACTGATCATCCA
ATTCCTTCTCCACTGGTACTCCCAAATCGAAGAACCTCAAAAATTTAAACTGAAGTGGAT
GGGACTGGGGAATGGGGTAGGGGGGGTGGGGGAAGGAAGGGGAGAAATCACTGTGCTTTG
TTCAGCCTGATGTGAAAGGATGGTTGGTGTTTTTCCTGCATTGTATCTTTTCTTACTGTT
TCTTTAATAAATGGGATGAGGGGGCTGTTCAGTTCA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               80-237, - strand, RNAz p=0.955552
               

               
               318-473, - strand, RNAz p=0.9409
               

               
               770-886, + strand, RNAz p=0.975515

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-237, - strand, RNAz p=0.955552
               

               
               318-473, - strand, RNAz p=0.9409
               

               
               770-886, + strand, RNAz p=0.975515

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_017804, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017804, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-996, gnl|bosTau2|chr18 (14000138-14001107)
               

               
               1-996, gnl|Hg17|chr16 (67710410-67709403)
               

               
               1-996, gnl|Mm7|chr8 (105484993-105484019)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-996, gnl|bosTau2|chr18 (14000138-14001107)
               

               
               1-996, gnl|Hg17|chr16 (67710410-67709403)
               

               
               1-996, gnl|Mm7|chr8 (105484993-105484019)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	80-237, - strand, RNAz p=0.955552
	318-473, - strand, RNAz p=0.9409
	770-886, + strand, RNAz p=0.975515

	1-996, gnl\|bosTau2\|chr18 (14000138-14001107)
	1-996, gnl\|Hg17\|chr16 (67710410-67709403)
	1-996, gnl\|Mm7\|chr8 (105484993-105484019)

	fcc (0.197785)
	rec (0.17307)
	pty (0.142714)
	ova (0.129132)
	thg (0.126791)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)
	ldo (0.0970026)