Non-Coding RNA Search

Ss1.1-rpldo0124_e13.5

Sequence:


               
               CAAGACTCTGTGTGGCATGGATGTGGGGAAGTCCTAAAGGCCAAATACAAAGGAAAAAGT
TATCGAGCTACTGTTGAGATAGTGAAAACAGCAGATCGGGTGACTGAATTCTGCCGACAA
ACCTGTATCAAACTGGAGTGCTGTCCTAATCTCTTTGGTCCACGGATGGTTCTGGATAAG
TGTTCTGAGAACTGCTCTGTACTTACAAAGACTAAATATACACACTACTATGGAAAGAAG
AAAAATAAAAGAATTGGGAGGCCACCTGGTGGGCATAGTAACTTAGCATGTGCACTGAAA
AAAGCCAGTAAAAGGAGAAAGAGGCGGAAAAATGTTTTTGTTCATAAGAAGAAACGCTCC
TCTACATCTGTTGATAATACCCCAGCAGGCTCTCCACAGGGGAGTGGGGGTGAAGATGAG
GATGACCCAGATGAAGGGGACGATGATTCCCTAAGTGAGGGCAGTACATCTGAGCAGCAG
GATGAACTCCAGGAAGAATCAGAAATGTCAGAAAAAAAGTCATGCTCCTCCTCTCCCACC
CAAAGTGAGATATCCACATCGATTCCTCCAGATAGACAGAGAAGAAAAAGAGAGCTGCGC
ACTTTTTCATTTTCTGATGATGAGAATAAACCTCCTTCACCAAAGGTACGCATTTAAAAC
TAGAGTGGCTGTTTTTTTCTCTCTTGACAATTCCCCTGAAGCTAATTCTTAATGATGTTG
GCATTACACTTATTTCAGTATAGGCTTCCGTTGAATTTCTTGGTCTCTTTTTAAAAGATT
CCAGAAGTTCTGCTGTAGCGAAGCAGGTTGAAAATC------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------AAAGACAAAAAA
TTAAAAAAAAATTAAAAAAAGAAAATCAGACCACAGTGATTCAACTTG------------
------------------------------------------------------------
------------------------------------------------------------
TGGCAAGGCCATTAAAAAAAAAAAAAAAGATTCCAAATTTAGTAATTAACTTGTGTTTCA
CTATGAAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGACTCTGTGTGGCATGGATGTGGGGAAGTCCTAAAGGCCAAATACAAAGGAAAAAGT
TATCGAGCTACTGTTGAGATAGTGAAAACAGCAGATCGGGTGACTGAATTCTGCCGACAA
ACCTGTATCAAACTGGAGTGCTGTCCTAATCTCTTTGGTCCACGGATGGTTCTGGATAAG
TGTTCTGAGAACTGCTCTGTACTTACAAAGACTAAATATACACACTACTATGGAAAGAAG
AAAAATAAAAGAATTGGGAGGCCACCTGGTGGGCATAGTAACTTAGCATGTGCACTGAAA
AAAGCCAGTAAAAGGAGAAAGAGGCGGAAAAATGTTTTTGTTCATAAGAAGAAACGCTCC
TCTACATCTGTTGATAATACCCCAGCAGGCTCTCCACAGGGGAGTGGGGGTGAAGATGAG
GATGACCCAGATGAAGGGGACGATGATTCCCTAAGTGAGGGCAGTACATCTGAGCAGCAG
GATGAACTCCAGGAAGAATCAGAAATGTCAGAAAAAAAGTCATGCTCCTCCTCTCCCACC
CAAAGTGAGATATCCACATCGATTCCTCCAGATAGACAGAGAAGAAAAAGAGAGCTGCGC
ACTTTTTCATTTTCTGATGATGAGAATAAACCTCCTTCACCAAAGGTACGCATTTAAAAC
TAGAGTGGCTGTTTTTTTCTCTCTTGACAATTCCCCTGAAGCTAATTCTTAATGATGTTG
GCATTACACTTATTTCAGTATAGGCTTCCGTTGAATTTCTTGGTCTCTTTTTAAAAGATT
CCAGAAGTTCTGCTGTAGCGAAGCAGGTTGAAAATC------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------AAAGACAAAAAA
TTAAAAAAAAATTAAAAAAAGAAAATCAGACCACAGTGATTCAACTTG------------
------------------------------------------------------------
------------------------------------------------------------
TGGCAAGGCCATTAAAAAAAAAAAAAAAGATTCCAAATTTAGTAATTAACTTGTGTTTCA
CTATGAAGGAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               37-220, gnl|bosTau2|chr22 (37180026-37179843)
               

               
               37-220, gnl|Hg17|chr3 (52920242-52920059)
               

               
               37-220, gnl|Mm7|chr14 (28240986-28241169)
               


               
               221-400, gnl|bosTau2|chr22 (37175816-37175637)
               

               
               221-400, gnl|Hg17|chr3 (52916789-52916610)
               

               
               221-400, gnl|Mm7|chr14 (28244679-28244858)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-220, gnl|bosTau2|chr22 (37180026-37179843)
               

               
               37-220, gnl|Hg17|chr3 (52920242-52920059)
               

               
               37-220, gnl|Mm7|chr14 (28240986-28241169)
               


               
               221-400, gnl|bosTau2|chr22 (37175816-37175637)
               

               
               221-400, gnl|Hg17|chr3 (52916789-52916610)
               

               
               221-400, gnl|Mm7|chr14 (28244679-28244858)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               ldo (0.0970026)

	37-220, gnl\|bosTau2\|chr22 (37180026-37179843)
	37-220, gnl\|Hg17\|chr3 (52920242-52920059)
	37-220, gnl\|Mm7\|chr14 (28240986-28241169)

	221-400, gnl\|bosTau2\|chr22 (37175816-37175637)
	221-400, gnl\|Hg17\|chr3 (52916789-52916610)
	221-400, gnl\|Mm7\|chr14 (28244679-28244858)