Non-Coding RNA Search

Ss1.1-rpldo0124_f21.5

Sequence:


               
               AAATATTTTTGAAAAGGTTTGGTAAAGATTATTTAAAAATATAGGGAATGGCTGGGTATG
GCCTTCCTGAAACTGCTATTATCTAAACTATAGTAGACTTTTGAGAGGTCTAAAGAGTCA
AGATGAAACCATTTGAGAGATGGGTATTTAGCTTTTGTCATTTTATATTTAAGAAACACC
CATAGCTGCTTGGTGCTCAATATTAAACATGGTCATTGGAGTTCTTCTCCACCATCTAGC
TAAATACATTTGTCATATAAACATATCTGTAAAGCAGTTTACTTTATATATCTTTTGTTA
AACAACCAACCGAAACAAAAAAGAAAGGAAGGAAGAAAGAAATGAAGGGAGGAGGGCAGG
CAGGCAGAAAGGAAAAGAAAAGTATTATCAGTCTTCAGTAAAAGGAATCTCAAACCATAT
ATCTTCTGCCTAAACATGTTGACTAGAATTGAAATTTGTTATTGAGAGCATCTGGTGATA
CTGCATTTGCCAGTAACTCTACTTTCTGGTCTTAGCAAGTATTTCCTTTTTTCACCCTCA
GAACCTGCTTGTTCAGCCAAGTAGAGAGTTAGCTCATGAGTTTTGTACTTTGGGGCTCTG
TCTATATCCCATGTGACAAGCCCCTGACCATCTGGAACCTTAGTTTCCTTTTTCTGCTTT
GTCAAATATTTTAATCTTTCACTATAAGTCAGCCAGAAGCCCTATCTAATAACTGTTACA
CCTATACAACCTCTCTTTCTGTTGGAGAACTTAGTGTTCATGGATGCAATCTTACTGCAT
TGTACTTTTGCTATTCTTCCCCATTTTTCACCAAAGTGAATGAGCCAGTCCACTAGACAC
CAGGGCCTGTGGGTTACAAGAGTCCTGATCACAAGACGTTACTAACTTTAATGATTTGCT
AGGAACAAACAAATCAGCCATATTTTCTCCATTAGCCATATGAGGAACCTCAGAAATACC
TAAATCCCTTCTGCCTCACTTCACTCTGGAGCCGTTTTTGTTTAAAGGTCTCTAAAATTG
GAGTTGTAATCATCAGTTGTCTTTTTCTCACTACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATATTTTTGAAAAGGTTTGGTAAAGATTATTTAAAAATATAGGGAATGGCTGGGTATG
GCCTTCCTGAAACTGCTATTATCTAAACTATAGTAGACTTTTGAGAGGTCTAAAGAGTCA
AGATGAAACCATTTGAGAGATGGGTATTTAGCTTTTGTCATTTTATATTTAAGAAACACC
CATAGCTGCTTGGTGCTCAATATTAAACATGGTCATTGGAGTTCTTCTCCACCATCTAGC
TAAATACATTTGTCATATAAACATATCTGTAAAGCAGTTTACTTTATATATCTTTTGTTA
AACAACCAACCGAAACAAAAAAGAAAGGAAGGAAGAAAGAAATGAAGGGAGGAGGGCAGG
CAGGCAGAAAGGAAAAGAAAAGTATTATCAGTCTTCAGTAAAAGGAATCTCAAACCATAT
ATCTTCTGCCTAAACATGTTGACTAGAATTGAAATTTGTTATTGAGAGCATCTGGTGATA
CTGCATTTGCCAGTAACTCTACTTTCTGGTCTTAGCAAGTATTTCCTTTTTTCACCCTCA
GAACCTGCTTGTTCAGCCAAGTAGAGAGTTAGCTCATGAGTTTTGTACTTTGGGGCTCTG
TCTATATCCCATGTGACAAGCCCCTGACCATCTGGAACCTTAGTTTCCTTTTTCTGCTTT
GTCAAATATTTTAATCTTTCACTATAAGTCAGCCAGAAGCCCTATCTAATAACTGTTACA
CCTATACAACCTCTCTTTCTGTTGGAGAACTTAGTGTTCATGGATGCAATCTTACTGCAT
TGTACTTTTGCTATTCTTCCCCATTTTTCACCAAAGTGAATGAGCCAGTCCACTAGACAC
CAGGGCCTGTGGGTTACAAGAGTCCTGATCACAAGACGTTACTAACTTTAATGATTTGCT
AGGAACAAACAAATCAGCCATATTTTCTCCATTAGCCATATGAGGAACCTCAGAAATACC
TAAATCCCTTCTGCCTCACTTCACTCTGGAGCCGTTTTTGTTTAAAGGTCTCTAAAATTG
GAGTTGTAATCATCAGTTGTCTTTTTCTCACTACCT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               3-1056, gnl|bosTau2|chr27 (29416763-29417792)
               

               
               3-1056, gnl|Hg17|chr3 (21436059-21434946)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1056, gnl|bosTau2|chr27 (29416763-29417792)
               

               
               3-1056, gnl|Hg17|chr3 (21436059-21434946)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               cbr (0.383926)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.383926)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               ret (0.128733)
               

               
               ldo (0.0970026)

	3-1056, gnl\|bosTau2\|chr27 (29416763-29417792)
	3-1056, gnl\|Hg17\|chr3 (21436059-21434946)

	cbr (0.383926)
	fce (0.271592)
	fcc (0.197785)
	ret (0.128733)
	ldo (0.0970026)