Non-Coding RNA Search

Ss1.1-rpldo0124_g17.5

Sequence:


               
               TTGCAGATCCTGCGCCAGAGCAGACGCACGCTGCCGACTTTGTCTCCTTCGGGCGACCCT
TACAGCCGTCTCAAGAACTTTCACTCCTCTGCGCACAATGGCAACTCTTAAGGAAAAACT
GATTGCACCAGTTGCAGAAGAAGAGACAACAATCCCAAACAATAAGATCACTGTAGTGGG
TGTTGGACAAGTCGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGACGGATGA
GCTTGCTCTGGTGGATGTTTTGGAAGATAAACTCAAAGGAGAAATGATGGATCTGCAGCA
CGGAAGCTTGTTCCTTCAGACACCCAAAATTGTGGCAGATAAAGATTACTCTGTGACCGC
CAATTCCAAGATTGTGGTGGTGACGGCAGGCGTTCGCCAGCAGGAGGGAGAGAGTCGTCT
CAATCTGGTGCAGAGGAACGTCAATGTCTTCAAGTTCATCATCCCTCAGATTGTCAAGTA
CAGTCCTGACTGCATCATAATTGTGGTTTCGAACCCAGTGGATATTCTCACATATGTTAC
CTGGAAGCTAAGTGGATTACCCAAGCACCGTGTGATTGGAAGTGGATGTAACCTGGATTC
TGCAAGGTTTCGCTATCTTATGGCTGAAAAGCTTGGTGTTCATCCCAGCAGCTGCCACGG
GTGGATTTTGGGAGAACATGGCGACTCAAGCGTGGCTGTGTGGAGTGGGGTGAATGTGGC
AGGTGTGTCTCTCCAGGAACTGAATCCAGAGATGGGAACGGACAATGATAGTGAAAATTG
GAAAGAAGTGCATAAGATGGTGGTTGAAAGTGCCTACGAAGTCATCAAGCTGAAAGGCTA
CACCAACTGGGCAATTGGCTTAAGCGTGGCTGATCTTATTGAATCCATGTTGAAAAACCT
ATCCAGGATTCACCCAGTGTCAACAATGGTGCAGGGCATGTATGGCATTGAGAATGAGGT
CTTCCTGAGCCTCCCATGTGTCCTGAATGCTCGAGGACTAACCAGTGTTATCAACCAGAA
GCTGAAGGATGATGAGGTTGCCCAGCTCAAGAACAGTGCTGACACTCTGTGGGGCATCCA
GAAGGATCTGAAGGACCTGTGACTCCCGGCTTCTAGGTTGTAGTAACCTACAAACTACAG
TGTGATTTCCCACAAGCCTTTAGTTTTCATCCATGTATGTGGAGCACAGTTTGCTTTTAT
CTTCCTTAAATATGTGAATGTGGGCTCCCAGAGTCAAAGCCCATGCTTAGTTTAATGCTT
TCAAGCAAGTCCTTGAACAAATAAAGTTAACTATCATAGTGTGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCAGATCCTGCGCCAGAGCAGACGCACGCTGCCGACTTTGTCTCCTTCGGGCGACCCT
TACAGCCGTCTCAAGAACTTTCACTCCTCTGCGCACAATGGCAACTCTTAAGGAAAAACT
GATTGCACCAGTTGCAGAAGAAGAGACAACAATCCCAAACAATAAGATCACTGTAGTGGG
TGTTGGACAAGTCGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGACGGATGA
GCTTGCTCTGGTGGATGTTTTGGAAGATAAACTCAAAGGAGAAATGATGGATCTGCAGCA
CGGAAGCTTGTTCCTTCAGACACCCAAAATTGTGGCAGATAAAGATTACTCTGTGACCGC
CAATTCCAAGATTGTGGTGGTGACGGCAGGCGTTCGCCAGCAGGAGGGAGAGAGTCGTCT
CAATCTGGTGCAGAGGAACGTCAATGTCTTCAAGTTCATCATCCCTCAGATTGTCAAGTA
CAGTCCTGACTGCATCATAATTGTGGTTTCGAACCCAGTGGATATTCTCACATATGTTAC
CTGGAAGCTAAGTGGATTACCCAAGCACCGTGTGATTGGAAGTGGATGTAACCTGGATTC
TGCAAGGTTTCGCTATCTTATGGCTGAAAAGCTTGGTGTTCATCCCAGCAGCTGCCACGG
GTGGATTTTGGGAGAACATGGCGACTCAAGCGTGGCTGTGTGGAGTGGGGTGAATGTGGC
AGGTGTGTCTCTCCAGGAACTGAATCCAGAGATGGGAACGGACAATGATAGTGAAAATTG
GAAAGAAGTGCATAAGATGGTGGTTGAAAGTGCCTACGAAGTCATCAAGCTGAAAGGCTA
CACCAACTGGGCAATTGGCTTAAGCGTGGCTGATCTTATTGAATCCATGTTGAAAAACCT
ATCCAGGATTCACCCAGTGTCAACAATGGTGCAGGGCATGTATGGCATTGAGAATGAGGT
CTTCCTGAGCCTCCCATGTGTCCTGAATGCTCGAGGACTAACCAGTGTTATCAACCAGAA
GCTGAAGGATGATGAGGTTGCCCAGCTCAAGAACAGTGCTGACACTCTGTGGGGCATCCA
GAAGGATCTGAAGGACCTGTGACTCCCGGCTTCTAGGTTGTAGTAACCTACAAACTACAG
TGTGATTTCCCACAAGCCTTTAGTTTTCATCCATGTATGTGGAGCACAGTTTGCTTTTAT
CTTCCTTAAATATGTGAATGTGGGCTCCCAGAGTCAAAGCCCATGCTTAGTTTAATGCTT
TCAAGCAAGTCCTTGAACAAATAAAGTTAACTATCATAGTGTGAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|473575|gb|AAA50438.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|473575|gb|AAA50438.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               267-386, - strand, RNAz p=0.721946
               

               
               1000-1119, - strand, RNAz p=0.67041

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               267-386, - strand, RNAz p=0.721946
               

               
               1000-1119, - strand, RNAz p=0.67041

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               22-1319, gnl|bosTau2|chr5 (53653109-53651812)
               

               
               22-1319, gnl|Hg17|chrX (75339040-75337726)
               

               
               22-1319, gnl|Mm7|chr19 (21635440-21636716)
               


               
               109-1248, gnl|bosTau2|chr11 (61814307-61815421)
               

               
               109-1248, gnl|Hg17|chrX (75338933-75337786)
               

               
               109-1248, gnl|Mm7|chr19 (21635524-21636661)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-1319, gnl|bosTau2|chr5 (53653109-53651812)
               

               
               22-1319, gnl|Hg17|chrX (75339040-75337726)
               

               
               22-1319, gnl|Mm7|chr19 (21635440-21636716)
               


               
               109-1248, gnl|bosTau2|chr11 (61814307-61815421)
               

               
               109-1248, gnl|Hg17|chrX (75338933-75337786)
               

               
               109-1248, gnl|Mm7|chr19 (21635524-21636661)

Expressed library(ies): 82 entry(ies)

More info

Expressed library(ies): 82 entry(ies)

Help | Less info


               
               hea (9.61145)
               

               
               che (5.58888)
               

               
               hlv (4.31695)
               

               
               fat (2.80112)
               

               
               pro (2.04813)
               

               
               cmu (1.49115)
               

               
               fce (1.35796)
               

               
               fhi (1.35662)
               

               
               clu (1.3161)
               

               
               fbs (1.22742)
               

               
               ssp (1.21968)
               

               
               ese (1.01202)
               

               
               lnt (0.996158)
               

               
               nlu (0.958405)
               

               
               bla (0.87043)
               

               
               nms (0.855432)
               

               
               eye (0.852515)
               

               
               ebs (0.828108)
               

               
               nco (0.808669)
               

               
               nmm (0.796813)
               

               
               ova (0.774793)
               

               
               sug (0.763747)
               

               
               spl (0.715922)
               

               
               fty (0.703359)
               

               
               mas (0.630915)
               

               
               tbr (0.616713)
               

               
               lun (0.601956)
               

               
               col (0.585023)
               

               
               med (0.58126)
               

               
               ecc (0.575175)
               

               
               cst (0.560146)
               

               
               nep (0.551775)
               

               
               nca (0.547495)
               

               
               lyg (0.532411)
               

               
               rec (0.519211)
               

               
               kid (0.518941)
               

               
               cut (0.509771)
               

               
               cki (0.495704)
               

               
               pgl (0.473934)
               

               
               pan (0.471921)
               

               
               isp (0.451128)
               

               
               ski (0.440205)
               

               
               hyp (0.42851)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               ctl (0.306138)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               ldo (0.291008)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 82 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (9.61145)
               

               
               che (5.58888)
               

               
               hlv (4.31695)
               

               
               fat (2.80112)
               

               
               pro (2.04813)
               

               
               cmu (1.49115)
               

               
               fce (1.35796)
               

               
               fhi (1.35662)
               

               
               clu (1.3161)
               

               
               fbs (1.22742)
               

               
               ssp (1.21968)
               

               
               ese (1.01202)
               

               
               lnt (0.996158)
               

               
               nlu (0.958405)
               

               
               bla (0.87043)
               

               
               nms (0.855432)
               

               
               eye (0.852515)
               

               
               ebs (0.828108)
               

               
               nco (0.808669)
               

               
               nmm (0.796813)
               

               
               ova (0.774793)
               

               
               sug (0.763747)
               

               
               spl (0.715922)
               

               
               fty (0.703359)
               

               
               mas (0.630915)
               

               
               tbr (0.616713)
               

               
               lun (0.601956)
               

               
               col (0.585023)
               

               
               med (0.58126)
               

               
               ecc (0.575175)
               

               
               cst (0.560146)
               

               
               nep (0.551775)
               

               
               nca (0.547495)
               

               
               lyg (0.532411)
               

               
               rec (0.519211)
               

               
               kid (0.518941)
               

               
               cut (0.509771)
               

               
               cki (0.495704)
               

               
               pgl (0.473934)
               

               
               pan (0.471921)
               

               
               isp (0.451128)
               

               
               ski (0.440205)
               

               
               hyp (0.42851)
               

               
               ute (0.398353)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               thg (0.380373)
               

               
               sto (0.359648)
               

               
               gul (0.355177)
               

               
               ton (0.351)
               

               
               sin (0.349895)
               

               
               duo (0.345602)
               

               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               ctl (0.306138)
               

               
               jej (0.296765)
               

               
               eje (0.296501)
               

               
               ldo (0.291008)
               

               
               eep (0.245128)
               

               
               eru (0.240096)
               

               
               spc (0.226732)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	267-386, - strand, RNAz p=0.721946
	1000-1119, - strand, RNAz p=0.67041

	22-1319, gnl\|bosTau2\|chr5 (53653109-53651812)
	22-1319, gnl\|Hg17\|chrX (75339040-75337726)
	22-1319, gnl\|Mm7\|chr19 (21635440-21636716)

	109-1248, gnl\|bosTau2\|chr11 (61814307-61815421)
	109-1248, gnl\|Hg17\|chrX (75338933-75337786)
	109-1248, gnl\|Mm7\|chr19 (21635524-21636661)

	hea (9.61145)
	che (5.58888)
	hlv (4.31695)
	fat (2.80112)
	pro (2.04813)
	cmu (1.49115)
	fce (1.35796)
	fhi (1.35662)
	clu (1.3161)
	fbs (1.22742)
	ssp (1.21968)
	ese (1.01202)
	lnt (0.996158)
	nlu (0.958405)
	bla (0.87043)
	nms (0.855432)
	eye (0.852515)
	ebs (0.828108)
	nco (0.808669)
	nmm (0.796813)
	ova (0.774793)
	sug (0.763747)
	spl (0.715922)
	fty (0.703359)
	mas (0.630915)
	tbr (0.616713)
	lun (0.601956)
	col (0.585023)
	med (0.58126)
	ecc (0.575175)
	cst (0.560146)
	nep (0.551775)
	nca (0.547495)
	lyg (0.532411)
	rec (0.519211)
	kid (0.518941)
	cut (0.509771)
	cki (0.495704)
	pgl (0.473934)
	pan (0.471921)
	isp (0.451128)
	ski (0.440205)
	hyp (0.42851)
	ute (0.398353)
	fcc (0.39557)
	aor (0.390549)
	elu (0.385356)
	thg (0.380373)
	sto (0.359648)
	gul (0.355177)
	ton (0.351)
	sin (0.349895)
	duo (0.345602)
	cbl (0.344392)
	vin (0.332557)
	nje (0.33184)
	ctl (0.306138)
	jej (0.296765)
	eje (0.296501)
	ldo (0.291008)
	eep (0.245128)
	eru (0.240096)
	spc (0.226732)
	cty (0.20816)
	fli (0.202881)
	nbm (0.198649)
	sag (0.182715)
	ill (0.175593)
	mcp (0.170648)
	cje (0.165235)
	csp (0.161186)
	mga (0.160205)
	eli (0.151814)
	lin (0.145603)
	ste (0.135208)
	pla (0.133672)
	cov (0.132153)
	ret (0.128733)
	cbr (0.127975)
	tra (0.123092)
	cly (0.120642)
	jca (0.11396)