Ss1.1-rpldo0125_d15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTAGCTGATAATGCAATCATCATTTATCAAACACACAAGAGAGTGTGGCCTGCTTCTC AGCGGGATGTATTATATCTCTCTGCCATTCGAAAGATACCAGCCAAGACTGAAAATGATC CAGAAACTTGGATTGTTTGTAATTTTTCTGTGGATCACAACAGTGCTCCTCTAAACAATC GATGTGTCCGTGCCAAGATAAATGTTGCTATGATTTGTCAAACCTTGGTAAGCCCACCAG AGGGTAACCAGGAGATTAGCAGGGACAACATTCTATGCAAGATTACATATGTAGCTAATG TGAACCCTGGAGGATGGGCGCCAGCCTCAGTGTTAAGGGCAGTGGCAAAGCGAGAATATC CAAAGTTTCTAAAGCGTTTTACTTCTTACGTACAGGAAAAAACTACAGGAAAACCTATCT TGTTCTAGTATTAACAGTGACTGAAGCAAGGCTGTGTGACATTCCATGTTGGAGGAAAAA AAACAAAATTGAATGCTCTAAGCTGGAACATAGGATCTATAGCCTTGTCTGTGGCCCAAC ACCTTGGCCTTGTATACAAAAATGAAAAAATACTGCAATAGCAAAGCTGAACATAACACT AGCTGTCTCCTGCTAGATCTCCTCGTGCAGCATATAACTATAAATACATGTAAGATTACA TGTATATGGCTATATTTTTATTTGCTTGCTCCTAGAAGAGAAAAAAAAATGAACTTTGAA TCATAACTAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTAGCTGATAATGCAATCATCATTTATCAAACACACAAGAGAGTGTGGCCTGCTTCTC AGCGGGATGTATTATATCTCTCTGCCATTCGAAAGATACCAGCCAAGACTGAAAATGATC CAGAAACTTGGATTGTTTGTAATTTTTCTGTGGATCACAACAGTGCTCCTCTAAACAATC GATGTGTCCGTGCCAAGATAAATGTTGCTATGATTTGTCAAACCTTGGTAAGCCCACCAG AGGGTAACCAGGAGATTAGCAGGGACAACATTCTATGCAAGATTACATATGTAGCTAATG TGAACCCTGGAGGATGGGCGCCAGCCTCAGTGTTAAGGGCAGTGGCAAAGCGAGAATATC CAAAGTTTCTAAAGCGTTTTACTTCTTACGTACAGGAAAAAACTACAGGAAAACCTATCT TGTTCTAGTATTAACAGTGACTGAAGCAAGGCTGTGTGACATTCCATGTTGGAGGAAAAA AAACAAAATTGAATGCTCTAAGCTGGAACATAGGATCTATAGCCTTGTCTGTGGCCCAAC ACCTTGGCCTTGTATACAAAAATGAAAAAATACTGCAATAGCAAAGCTGAACATAACACT AGCTGTCTCCTGCTAGATCTCCTCGTGCAGCATATAACTATAAATACATGTAAGATTACA TGTATATGGCTATATTTTTATTTGCTTGCTCCTAGAAGAGAAAAAAAAATGAACTTTGAA TCATAACTAGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 434-732, - strand, RNAz p=0.988341 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 434-732, - strand, RNAz p=0.988341 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 171-300, gnl|bosTau2|chr10 (1877588-1877717) | |
| 171-300, gnl|canFam2|chr3 (33843863-33843697) | |
| 171-300, gnl|danRer3|chr5 (57317584-57317430) | |
| 171-300, gnl|dasNov1|scaffold_11914 (6621-6781) | |
| 171-300, gnl|echTel1|scaffold_310326 (8038-7876) | |
| 171-300, gnl|fr1|chrUn (212667149-212666991) | |
| 171-300, gnl|galGal2|chrZ (10125941-10126099) | |
| 171-300, gnl|hg17|chr5 (74712646-74712806) | |
| 171-300, gnl|Hg17|chr5 (74712782-74712653) | |
| 171-300, gnl|loxAfr1|scaffold_10127 (42942-43094) | |
| 171-300, gnl|mm7|chr13 (93704349-93704183) | |
| 171-300, gnl|Mm7|chr13 (93704211-93704340) | |
| 171-300, gnl|monDom2|scaffold_60 (9721125-9721308) | |
| 171-300, gnl|oryCun1|scaffold_168392 (6017-5851) | |
| 171-300, gnl|panTro1|chr4 (40711101-40710941) | |
| 171-300, gnl|rheMac2|chr6 (71581538-71581698) | |
| 171-300, gnl|rn3|chr2 (27032478-27032314) | |
| 171-300, gnl|tetNig1|chrUn_random (1522115-1522266) | |
| 171-300, gnl|xenTro1|scaffold_120 (2009524-2009681) | |
| 434-732, gnl|bosTau2|chr10 (1881347-1881657) | |
| 434-732, gnl|Hg17|chr5 (74705776-74705471) | |
| 434-732, gnl|Mm7|chr13 (93706471-93706750) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 171-300, gnl|bosTau2|chr10 (1877588-1877717) | |
| 171-300, gnl|canFam2|chr3 (33843863-33843697) | |
| 171-300, gnl|danRer3|chr5 (57317584-57317430) | |
| 171-300, gnl|dasNov1|scaffold_11914 (6621-6781) | |
| 171-300, gnl|echTel1|scaffold_310326 (8038-7876) | |
| 171-300, gnl|fr1|chrUn (212667149-212666991) | |
| 171-300, gnl|galGal2|chrZ (10125941-10126099) | |
| 171-300, gnl|hg17|chr5 (74712646-74712806) | |
| 171-300, gnl|Hg17|chr5 (74712782-74712653) | |
| 171-300, gnl|loxAfr1|scaffold_10127 (42942-43094) | |
| 171-300, gnl|mm7|chr13 (93704349-93704183) | |
| 171-300, gnl|Mm7|chr13 (93704211-93704340) | |
| 171-300, gnl|monDom2|scaffold_60 (9721125-9721308) | |
| 171-300, gnl|oryCun1|scaffold_168392 (6017-5851) | |
| 171-300, gnl|panTro1|chr4 (40711101-40710941) | |
| 171-300, gnl|rheMac2|chr6 (71581538-71581698) | |
| 171-300, gnl|rn3|chr2 (27032478-27032314) | |
| 171-300, gnl|tetNig1|chrUn_random (1522115-1522266) | |
| 171-300, gnl|xenTro1|scaffold_120 (2009524-2009681) | |
| 434-732, gnl|bosTau2|chr10 (1881347-1881657) | |
| 434-732, gnl|Hg17|chr5 (74705776-74705471) | |
| 434-732, gnl|Mm7|chr13 (93706471-93706750) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| ldo (0.0970026) |