Non-Coding RNA Search

Ss1.1-rpldo0125_h17.5

Sequence:


               
               ATATTGGTAATGGGAGAGGTAATGCATGTGTGGGGGCAGGGTTATAAGGGAAATCAGTGT
ACTGTGAACCTAAGATTGCTCTAAAATATAGTCTATTAGAACACATACACGGAGTTCTCA
TTGTGGCTCAGCAGTAAAGAACCAACTAGTATCCATGAGGACATGGGTTTGATCCCTGAC
CTTGCTCAGTGAGGTAAGGATCTGGCGTTGCTGTGAGCTGTGGTGTAGGTCACAGACATG
GGTCAGATCCTGAGTTGCTGTGGCTGTGGCGTAGGCTGGCAGCTACAGTCTGAGAACTTC
CATGTGCCTCAGGTGCAGCCCTAAAAAGACAACACATACACACACACCCCTACACCTTCC
CCTGGGATTTATTTTTGCTCTCAGATCTGAAGATAGTAATCTTTATTATCTACAGACTAG
ATCCATCCCTGGCCCCTGCTACAAATTGTTGCTTACTTCCCAGATTCAAATTTACTGGTT
TATCAAAACTTTAATATGCCTTTTACTTCTCACCCTATGTCCAATCTCGTGGGGTTTTTA
TAGACTGCCCTTTCCCCATCTCATGGCTTTTAGCAGTACTTGCCAAGTGAATCCAAGCAG
GAAGGAGTCAGTTTAAAGATTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTGGTAATGGGAGAGGTAATGCATGTGTGGGGGCAGGGTTATAAGGGAAATCAGTGT
ACTGTGAACCTAAGATTGCTCTAAAATATAGTCTATTAGAACACATACACGGAGTTCTCA
TTGTGGCTCAGCAGTAAAGAACCAACTAGTATCCATGAGGACATGGGTTTGATCCCTGAC
CTTGCTCAGTGAGGTAAGGATCTGGCGTTGCTGTGAGCTGTGGTGTAGGTCACAGACATG
GGTCAGATCCTGAGTTGCTGTGGCTGTGGCGTAGGCTGGCAGCTACAGTCTGAGAACTTC
CATGTGCCTCAGGTGCAGCCCTAAAAAGACAACACATACACACACACCCCTACACCTTCC
CCTGGGATTTATTTTTGCTCTCAGATCTGAAGATAGTAATCTTTATTATCTACAGACTAG
ATCCATCCCTGGCCCCTGCTACAAATTGTTGCTTACTTCCCAGATTCAAATTTACTGGTT
TATCAAAACTTTAATATGCCTTTTACTTCTCACCCTATGTCCAATCTCGTGGGGTTTTTA
TAGACTGCCCTTTCCCCATCTCATGGCTTTTAGCAGTACTTGCCAAGTGAATCCAAGCAG
GAAGGAGTCAGTTTAAAGATTAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               324-475, - strand, RNAz p=0.995548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               324-475, - strand, RNAz p=0.995548

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-110, gnl|bosTau2|chr26 (14160704-14160594)
               


               
               324-625, gnl|bosTau2|chr26 (14160606-14160309)
               

               
               324-625, gnl|Hg17|chr10 (104102795-104103095)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-110, gnl|bosTau2|chr26 (14160704-14160594)
               


               
               324-625, gnl|bosTau2|chr26 (14160606-14160309)
               

               
               324-625, gnl|Hg17|chr10 (104102795-104103095)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	1-110, gnl\|bosTau2\|chr26 (14160704-14160594)

	324-625, gnl\|bosTau2\|chr26 (14160606-14160309)
	324-625, gnl\|Hg17\|chr10 (104102795-104103095)