Ss1.1-rpldo0125_k1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATTCAAAGATCCTCGCAATGGCAAGTCATCTGTAACTAAAGGTGGCCCACAGATTGCT TATGAACGCAGCTTTAGGTGGAAACTTGCTCACTTCCGTTATTTGTGCCAGTCTAATGCA CTACCCAGTCATGTAAAGATCAATGTGTCCCGGCAGACATTGTTCGAAGATTCCTTCCAA CAGATTATGGCATTAAAACCCTATGACTTGAGGAGGAGATTGTATGTAATATTTAGAGGA GAAGAAGGACTTGATTATGGTGGTCTAGCAAGAGAATGGTTTTTCTTGCTTTCACACGAA GTTTTAAATCCCATGTATTGCTTATTTGAGTATGCTGGAAAGAACAACTACTGTCTACAG ATAAATCCAGCATCAACCATCAACCCAGATCATCTTTCATACTTCTGTTTCATTGGTCGC TTTATTGCTATGGCACTTTTTCATGGAAAGTTTATTGATACCGGTTTCTCCTTACCCTTC TACAAGCGTATGCTAAGTAAAAAACTGACTATTAAGGATTTGGAATCTATCGATACTGAA TTTTATAACTCCCTTATCTGGATAAGAGACAACAACATTGAAGAATGTGGCCTAGAAATG TACTTTTCTGTTGACATGGAGATTTTGGGGAAAGTTACTTCACATGACCTGAAGTTGGGA GGTTCTAATATCCTGGTGACTGAGGAGAACAAAGATGAATATATTGGCTTAATGACAGAG TGGCGTTTTTCTCGAGGAGTACAAGAACAGACCAAAGCTTTCCTTGATGGTTTCAATGAA GTTGTTCCCCTTCAGTGGCTACAGTACTTTGATGAAAAAGAATTGGAGGTTATGTTGTGT GGCATGCAGGAGGTTGACTTGGCAGATTGGCAAAGAAACACCGTGTACCGCCATTACACA AGAAATAGCAAGCAGATCATTTGGTTTTGGCAGTTTGTGAAAGAGACAGACAATGAAGTA AGAATGCGACTGTTGCAGTTTGTCACTGGAACCTGCCGTTTACCTCTAGGAGGATTTGCT GAGCTCATGGGAAGTAATGGGCCTCAAAAATTTTGCATTGAAAAAGTTGGCAAAGACACC TGGTTACCAAGAAGCCACACGTGTTTTAATCGCTTGGATCTACCACCATATAAGAGTTAT GAACAACTAAAGGAAAAACTTCTTTTTGCAATAGAAGAGACAGAGGGATTTGGACAAGAA TGAATATGGCTTCTTGTCTTGGAGGAGCTCTTGCATTTAAATACCCCAGCCAAGAAAAAT TGCACAGATAGTGTATATAAGCTGTTCATTATGTACAGTGAATTTTCTGAACCTCTCAAA GTATAAATGTTTTCCGTTCTTCCACAGAAATATGCAAAACAGCTCATCCTTTTCTACTTT ATTTATTGTTCCCTTGAAGTGACTGACCAGGAAAAAGATCATCCTTAAATTTTCAAGCAA ACAAGAGACTTTATTAAAAATAATAAGTATATATCTATATAAGCATTTATGATAGTGGCT CTAGTTTTATAGAGCTCTGAGTGTATTAACATGACAGCCATTCATTCAAAAATAATCTGG ATTTGTTTTACCTTGTTTCTGTTATCCAGGGAAAGTACAAATTGCTCCATGTTTTTTCTC CCTTTTGTAACATCTCCTGAAGGTGTTTAGTTGCATGGCTGTTCAGGAAGGTATTAAGGG CTTAGGCCAAATCTTACTTTGAATATGTTAAAAATGCTGCTGGCTTTTTGAAAGACAGGT GCTTGAACCTGTCAATTTGTTTTAAATAAATATAATAGTTGAAAAATTTCCCTCTTTGCT ACATCACTAATACTGTTAAATTCATGAATGAAACCATAACTTAAATGAAAGTCGTGTACT AACTAGATCCATTACATTTAGTTTATTCTAGAAATTAGAATTCATTGAGCAGCATAGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATTCAAAGATCCTCGCAATGGCAAGTCATCTGTAACTAAAGGTGGCCCACAGATTGCT TATGAACGCAGCTTTAGGTGGAAACTTGCTCACTTCCGTTATTTGTGCCAGTCTAATGCA CTACCCAGTCATGTAAAGATCAATGTGTCCCGGCAGACATTGTTCGAAGATTCCTTCCAA CAGATTATGGCATTAAAACCCTATGACTTGAGGAGGAGATTGTATGTAATATTTAGAGGA GAAGAAGGACTTGATTATGGTGGTCTAGCAAGAGAATGGTTTTTCTTGCTTTCACACGAA GTTTTAAATCCCATGTATTGCTTATTTGAGTATGCTGGAAAGAACAACTACTGTCTACAG ATAAATCCAGCATCAACCATCAACCCAGATCATCTTTCATACTTCTGTTTCATTGGTCGC TTTATTGCTATGGCACTTTTTCATGGAAAGTTTATTGATACCGGTTTCTCCTTACCCTTC TACAAGCGTATGCTAAGTAAAAAACTGACTATTAAGGATTTGGAATCTATCGATACTGAA TTTTATAACTCCCTTATCTGGATAAGAGACAACAACATTGAAGAATGTGGCCTAGAAATG TACTTTTCTGTTGACATGGAGATTTTGGGGAAAGTTACTTCACATGACCTGAAGTTGGGA GGTTCTAATATCCTGGTGACTGAGGAGAACAAAGATGAATATATTGGCTTAATGACAGAG TGGCGTTTTTCTCGAGGAGTACAAGAACAGACCAAAGCTTTCCTTGATGGTTTCAATGAA GTTGTTCCCCTTCAGTGGCTACAGTACTTTGATGAAAAAGAATTGGAGGTTATGTTGTGT GGCATGCAGGAGGTTGACTTGGCAGATTGGCAAAGAAACACCGTGTACCGCCATTACACA AGAAATAGCAAGCAGATCATTTGGTTTTGGCAGTTTGTGAAAGAGACAGACAATGAAGTA AGAATGCGACTGTTGCAGTTTGTCACTGGAACCTGCCGTTTACCTCTAGGAGGATTTGCT GAGCTCATGGGAAGTAATGGGCCTCAAAAATTTTGCATTGAAAAAGTTGGCAAAGACACC TGGTTACCAAGAAGCCACACGTGTTTTAATCGCTTGGATCTACCACCATATAAGAGTTAT GAACAACTAAAGGAAAAACTTCTTTTTGCAATAGAAGAGACAGAGGGATTTGGACAAGAA TGAATATGGCTTCTTGTCTTGGAGGAGCTCTTGCATTTAAATACCCCAGCCAAGAAAAAT TGCACAGATAGTGTATATAAGCTGTTCATTATGTACAGTGAATTTTCTGAACCTCTCAAA GTATAAATGTTTTCCGTTCTTCCACAGAAATATGCAAAACAGCTCATCCTTTTCTACTTT ATTTATTGTTCCCTTGAAGTGACTGACCAGGAAAAAGATCATCCTTAAATTTTCAAGCAA ACAAGAGACTTTATTAAAAATAATAAGTATATATCTATATAAGCATTTATGATAGTGGCT CTAGTTTTATAGAGCTCTGAGTGTATTAACATGACAGCCATTCATTCAAAAATAATCTGG ATTTGTTTTACCTTGTTTCTGTTATCCAGGGAAAGTACAAATTGCTCCATGTTTTTTCTC CCTTTTGTAACATCTCCTGAAGGTGTTTAGTTGCATGGCTGTTCAGGAAGGTATTAAGGG CTTAGGCCAAATCTTACTTTGAATATGTTAAAAATGCTGCTGGCTTTTTGAAAGACAGGT GCTTGAACCTGTCAATTTGTTTTAAATAAATATAATAGTTGAAAAATTTCCCTCTTTGCT ACATCACTAATACTGTTAAATTCATGAATGAAACCATAACTTAAATGAAAGTCGTGTACT AACTAGATCCATTACATTTAGTTTATTCTAGAAATTAGAATTCATTGAGCAGCATAGAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1182-1301, + strand, RNAz p=0.566161 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1182-1301, + strand, RNAz p=0.566161 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_007013, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 271-433, gnl|bosTau2|chr13 (47480081-47479919) | |
| 271-433, gnl|Hg17|chr20 (32531094-32531256) | |
| 271-433, gnl|Mm7|chr2 (154949915-154950077) | |
| 565-707, gnl|bosTau2|chr14 (48203064-48202922) | |
| 565-707, gnl|Hg17|chr8 (87529716-87529858) | |
| 565-707, gnl|Mm7|chr4 (19554923-19554781) | |
| 718-834, gnl|bosTau2|chr13 (47474632-47474516) | |
| 718-834, gnl|canFam2|chr24 (26586932-26587079) | |
| 718-834, gnl|danRer3|chr14 (37110085-37109937) | |
| 718-834, gnl|dasNov1|scaffold_99939 (4666-4550) | |
| 718-834, gnl|echTel1|scaffold_202341 (5848-5701) | |
| 718-834, gnl|fr1|chrUn (124318396-124318249) | |
| 718-834, gnl|galGal2|chr20 (1354028-1353888) | |
| 718-834, gnl|hg17|chr20 (32540712-32540859) | |
| 718-834, gnl|Hg17|chr20 (32540742-32540858) | |
| 718-834, gnl|loxAfr1|scaffold_15109 (34581-34723) | |
| 718-834, gnl|mm7|chr2 (154953175-154953322) | |
| 718-834, gnl|Mm7|chr2 (154953205-154953321) | |
| 718-834, gnl|monDom2|scaffold_6 (12492008-12491861) | |
| 718-834, gnl|oryCun1|scaffold_201521 (253621-253474) | |
| 718-834, gnl|panTro1|chr21 (34550649-34550796) | |
| 718-834, gnl|rheMac2|chr10 (30075015-30074868) | |
| 718-834, gnl|rn3|chr3 (145601094-145601241) | |
| 718-834, gnl|tetNig1|chr11 (7202438-7202312) | |
| 718-834, gnl|xenTro1|scaffold_35 (1401893-1401759) | |
| 919-1031, gnl|bosTau2|chr13 (47472022-47471910) | |
| 919-1031, gnl|Hg17|chr20 (32543952-32544064) | |
| 919-1031, gnl|Mm7|chr2 (154958834-154958946) | |
| 1103-1920, gnl|bosTau2|chr14 (48182881-48182045) | |
| 1103-1920, gnl|Hg17|chr8 (87548138-87548959) | |
| 1103-1920, gnl|Mm7|chr4 (19538962-19538199) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 271-433, gnl|bosTau2|chr13 (47480081-47479919) | |
| 271-433, gnl|Hg17|chr20 (32531094-32531256) | |
| 271-433, gnl|Mm7|chr2 (154949915-154950077) | |
| 565-707, gnl|bosTau2|chr14 (48203064-48202922) | |
| 565-707, gnl|Hg17|chr8 (87529716-87529858) | |
| 565-707, gnl|Mm7|chr4 (19554923-19554781) | |
| 718-834, gnl|bosTau2|chr13 (47474632-47474516) | |
| 718-834, gnl|canFam2|chr24 (26586932-26587079) | |
| 718-834, gnl|danRer3|chr14 (37110085-37109937) | |
| 718-834, gnl|dasNov1|scaffold_99939 (4666-4550) | |
| 718-834, gnl|echTel1|scaffold_202341 (5848-5701) | |
| 718-834, gnl|fr1|chrUn (124318396-124318249) | |
| 718-834, gnl|galGal2|chr20 (1354028-1353888) | |
| 718-834, gnl|hg17|chr20 (32540712-32540859) | |
| 718-834, gnl|Hg17|chr20 (32540742-32540858) | |
| 718-834, gnl|loxAfr1|scaffold_15109 (34581-34723) | |
| 718-834, gnl|mm7|chr2 (154953175-154953322) | |
| 718-834, gnl|Mm7|chr2 (154953205-154953321) | |
| 718-834, gnl|monDom2|scaffold_6 (12492008-12491861) | |
| 718-834, gnl|oryCun1|scaffold_201521 (253621-253474) | |
| 718-834, gnl|panTro1|chr21 (34550649-34550796) | |
| 718-834, gnl|rheMac2|chr10 (30075015-30074868) | |
| 718-834, gnl|rn3|chr3 (145601094-145601241) | |
| 718-834, gnl|tetNig1|chr11 (7202438-7202312) | |
| 718-834, gnl|xenTro1|scaffold_35 (1401893-1401759) | |
| 919-1031, gnl|bosTau2|chr13 (47472022-47471910) | |
| 919-1031, gnl|Hg17|chr20 (32543952-32544064) | |
| 919-1031, gnl|Mm7|chr2 (154958834-154958946) | |
| 1103-1920, gnl|bosTau2|chr14 (48182881-48182045) | |
| 1103-1920, gnl|Hg17|chr8 (87548138-87548959) | |
| 1103-1920, gnl|Mm7|chr4 (19538962-19538199) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| sme (1.22175) | |
| tbr (1.07925) | |
| cbl (0.573987) | |
| ste (0.405625) | |
| ssp (0.271039) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fco (0.157208) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| ecc (0.115035) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (1.22175) | |
| tbr (1.07925) | |
| cbl (0.573987) | |
| ste (0.405625) | |
| ssp (0.271039) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fco (0.157208) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| ecc (0.115035) |