Non-Coding RNA Search

Ss1.1-rpldo0125_k17.5

Sequence:


               
               GTTTCTAAAGATTCTGTCACCTACAAATAAGAATAGTCAAATTTTTCTTTGCCTGTACTA
AAGGGACATTTCAAGTGTTCAGCTTAAAACCAAGTAATATTTGAGCCTTGGATATACCAT
TTTACTTTACAAAATGACAGAGAACTCATTTTTTCACTCCCATTTTAAATAGCTTTCATT
CAAGCAAAATCAGGTAGGATATCATCTTTGACTTGAATTTCAGGTAATCACTACCATGGT
CACTATACCATTCACAAGCATTTTCCCCACCTGAGTTGGTTTTAAATTTACATTAAGACA
ACTATTCCCTCAGTCCCCTACTTTTGCCAGAAAGCAGAAAAGTCTGCTCTATTTTTATAT
AGAAAGAGTAAATTCTCCAGTGATATTTTTAAAAATATCAACCTATATGCACTTTAGAAT
GTAAAATAACAGTGACCTGTTTAAACTCAAAGACCCACTATTTTGAATATTTTTTATAGA
GACTTGGTCTTTCCATGTAAATATTTGGTTTTTCTTTTTCCTTCAATCTCAGGCTCTTTT
GTCATCTTTCAAGCAACATCTGTAAAACCCCCTTATGCCTGTAGATGTGAGTGTGGCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTAAAGATTCTGTCACCTACAAATAAGAATAGTCAAATTTTTCTTTGCCTGTACTA
AAGGGACATTTCAAGTGTTCAGCTTAAAACCAAGTAATATTTGAGCCTTGGATATACCAT
TTTACTTTACAAAATGACAGAGAACTCATTTTTTCACTCCCATTTTAAATAGCTTTCATT
CAAGCAAAATCAGGTAGGATATCATCTTTGACTTGAATTTCAGGTAATCACTACCATGGT
CACTATACCATTCACAAGCATTTTCCCCACCTGAGTTGGTTTTAAATTTACATTAAGACA
ACTATTCCCTCAGTCCCCTACTTTTGCCAGAAAGCAGAAAAGTCTGCTCTATTTTTATAT
AGAAAGAGTAAATTCTCCAGTGATATTTTTAAAAATATCAACCTATATGCACTTTAGAAT
GTAAAATAACAGTGACCTGTTTAAACTCAAAGACCCACTATTTTGAATATTTTTTATAGA
GACTTGGTCTTTCCATGTAAATATTTGGTTTTTCTTTTTCCTTCAATCTCAGGCTCTTTT
GTCATCTTTCAAGCAACATCTGTAAAACCCCCTTATGCCTGTAGATGTGAGTGTGGCAGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-593, gnl|bosTau2|chr1 (22095069-22095625)
               

               
               28-593, gnl|Hg17|chr3 (99145645-99146207)
               

               
               28-593, gnl|Mm7|chr16 (59428755-59428251)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-593, gnl|bosTau2|chr1 (22095069-22095625)
               

               
               28-593, gnl|Hg17|chr3 (99145645-99146207)
               

               
               28-593, gnl|Mm7|chr16 (59428755-59428251)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               aor (0.195274)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	28-593, gnl\|bosTau2\|chr1 (22095069-22095625)
	28-593, gnl\|Hg17\|chr3 (99145645-99146207)
	28-593, gnl\|Mm7\|chr16 (59428755-59428251)

	aor (0.195274)
	ton (0.1755)
	tbr (0.154178)
	hlv (0.139256)
	ute (0.132784)
	tra (0.123092)
	ldo (0.0970026)