Non-Coding RNA Search

Ss1.1-rpldo0126_a18.5.5

Sequence:


               
               CTGGAACTCACATCCAGATTCTCAGTGCCCAGGCTCAGGCCCTCTCCCCTACCCCATGCT
GAGGCTTGTCCCCAGGGGTGGGAGGCCCAGCGTTAGAAGCAGACATCTGGTGTGTGTTGC
GGTCTTCTTGTGTGAGAGTCTTATGACTGCCTTGGATGGGCTCTGGCTAATACATTGTCC
CTTGTGCTCTGTGGGTGTGTCCTAGGCCAGTAAGAGGACAGCAAACGCCCCACTGAATTG
TCTGCTGCGTGGTGACACTCACGGTTTTCATCCTGGCCCTGTGCCAGTGGAAGATTTCCC
AGTCCCTTCTGAATTATCACAGACCTTGGTTTTAGTATTAAGTGCATGTAGTGCTATTCT
TATCATTTGGACGTCGGTGATCAGGGTATTCATCAGGAGTTGCAAACTCAAAGGCTTATG
GGAGCTGGCATGTCACCTAACTGAGAAGAGCTGGCAGGTGTGGGGGTTTTGGGCGTCCCT
ACACTCATCTACTTGCCTGTAGTTCTCAATTGACACTTGGCTTCACTGTCGGAGGGAAGA
CTGGTGTGGCGGTGACTGTGGCAATCTGGAAGGTGTGGAGAGCTGCTGCTCTTGACTCCC
TGGATTGCTGTCACAGGGGGTCACAGAAGATCCCCTTCCTTGGCCATGTCCAATGATGGA
GTGAACTATGAAAACAAAGCCGTAGCAGCTGCCTATCTCTGGCCTGGAGAATTCACCCTC
CAGCTCCCTTTGGCTCCACATGACCCAGATTTTCTGAATCCTGGGACCTCACTTCACACT
GAGGACCAGGTCACAGGAAAGCCAAAAGCCGCTGGGTTTTATGGAAATTGCCTTTCACTT
AATCTGCATTTACCATTTCCTTTCCTTGTGCAGAGAAAGAAAAAAACCAAGGTGGGTGTA
ACAGGGTGAGTGGGCAGAGAATGGAATGTGTGTGCGTGCGCATGCGTGCACTGGACTTGC
CTCCTCCCCAGCCCTCCGCCTCCTTCCCTGAGCTCCTGTTACAGCTATGGGTGTGCGGCC
ATGACAGCGAACACTTGCCAGGTGGAAGCTATGCACCAGACACTCTTCTAGGTGCTTTCC
ATGAATTAACTCAATCCTCACAACTACCCTATACGA------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAATAATAAATGTGTTCAGTACCACTAAAACGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAACTCACATCCAGATTCTCAGTGCCCAGGCTCAGGCCCTCTCCCCTACCCCATGCT
GAGGCTTGTCCCCAGGGGTGGGAGGCCCAGCGTTAGAAGCAGACATCTGGTGTGTGTTGC
GGTCTTCTTGTGTGAGAGTCTTATGACTGCCTTGGATGGGCTCTGGCTAATACATTGTCC
CTTGTGCTCTGTGGGTGTGTCCTAGGCCAGTAAGAGGACAGCAAACGCCCCACTGAATTG
TCTGCTGCGTGGTGACACTCACGGTTTTCATCCTGGCCCTGTGCCAGTGGAAGATTTCCC
AGTCCCTTCTGAATTATCACAGACCTTGGTTTTAGTATTAAGTGCATGTAGTGCTATTCT
TATCATTTGGACGTCGGTGATCAGGGTATTCATCAGGAGTTGCAAACTCAAAGGCTTATG
GGAGCTGGCATGTCACCTAACTGAGAAGAGCTGGCAGGTGTGGGGGTTTTGGGCGTCCCT
ACACTCATCTACTTGCCTGTAGTTCTCAATTGACACTTGGCTTCACTGTCGGAGGGAAGA
CTGGTGTGGCGGTGACTGTGGCAATCTGGAAGGTGTGGAGAGCTGCTGCTCTTGACTCCC
TGGATTGCTGTCACAGGGGGTCACAGAAGATCCCCTTCCTTGGCCATGTCCAATGATGGA
GTGAACTATGAAAACAAAGCCGTAGCAGCTGCCTATCTCTGGCCTGGAGAATTCACCCTC
CAGCTCCCTTTGGCTCCACATGACCCAGATTTTCTGAATCCTGGGACCTCACTTCACACT
GAGGACCAGGTCACAGGAAAGCCAAAAGCCGCTGGGTTTTATGGAAATTGCCTTTCACTT
AATCTGCATTTACCATTTCCTTTCCTTGTGCAGAGAAAGAAAAAAACCAAGGTGGGTGTA
ACAGGGTGAGTGGGCAGAGAATGGAATGTGTGTGCGTGCGCATGCGTGCACTGGACTTGC
CTCCTCCCCAGCCCTCCGCCTCCTTCCCTGAGCTCCTGTTACAGCTATGGGTGTGCGGCC
ATGACAGCGAACACTTGCCAGGTGGAAGCTATGCACCAGACACTCTTCTAGGTGCTTTCC
ATGAATTAACTCAATCCTCACAACTACCCTATACGA------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AAATAATAAATGTGTTCAGTACCACTAAAACGAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-156, - strand, RNAz p=0.611779
               

               
               507-627, + strand, RNAz p=0.992799

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, - strand, RNAz p=0.611779
               

               
               507-627, + strand, RNAz p=0.992799

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               559-637, + strand, RNAmicro p=0.999712
               

               
               11-134, - strand, RNAmicro p=0.948849

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               559-637, + strand, RNAmicro p=0.999712
               

               
               11-134, - strand, RNAmicro p=0.948849

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK125515, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK125515, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-627, gnl|bosTau2|chr10 (17228102-17228714)
               

               
               1-627, gnl|Hg17|chr15 (40484005-40484628)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-627, gnl|bosTau2|chr10 (17228102-17228714)
               

               
               1-627, gnl|Hg17|chr15 (40484005-40484628)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.194005)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)

	1-156, - strand, RNAz p=0.611779
	507-627, + strand, RNAz p=0.992799

	559-637, + strand, RNAmicro p=0.999712
	11-134, - strand, RNAmicro p=0.948849

	1-627, gnl\|bosTau2\|chr10 (17228102-17228714)
	1-627, gnl\|Hg17\|chr15 (40484005-40484628)