Non-Coding RNA Search

Ss1.1-rpldo0126_n22.5

Sequence:


               
               AAGGATGCTGTCCCGAAAGAAAACCAAAAATGAAGTGTCCAAGCCGGCCGAGGTGCAGGG
TGAAGTACGTGAAGAAGGAGACGTCGCCTCTGCTGCGGAATCTCATGCCTTCATTCATCC
GGCACGGTCCCACAATTCCAAGACGAACTGATATCTGTCTTCCAGATTCCAGCTCTAATG
CCTTTTCAGCTTCTGGAGATGGAATAGTTTCAAGAAACCAGAGTTTCCTTAGAACTCCAA
TTCAAAGAACACCTCATGAAATAATGAGAAGAGAAAGCAACAGATTATCTGCACCTTCTT
ATCTTGCCAGGAGTCTAGCAGATGTCCCTAGGGAATATGGCTCTTCTCAGTCATTTTTAA
CAGAAGTTAATTTTGCTGTTGAAAATGGAGACTCTGGTTCCCGATATTATTATTCCGATA
ATTATTTTGATGGTCAGAGGAGGCGCCAGCTTGGAGATCGCACACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGATGCTGTCCCGAAAGAAAACCAAAAATGAAGTGTCCAAGCCGGCCGAGGTGCAGGG
TGAAGTACGTGAAGAAGGAGACGTCGCCTCTGCTGCGGAATCTCATGCCTTCATTCATCC
GGCACGGTCCCACAATTCCAAGACGAACTGATATCTGTCTTCCAGATTCCAGCTCTAATG
CCTTTTCAGCTTCTGGAGATGGAATAGTTTCAAGAAACCAGAGTTTCCTTAGAACTCCAA
TTCAAAGAACACCTCATGAAATAATGAGAAGAGAAAGCAACAGATTATCTGCACCTTCTT
ATCTTGCCAGGAGTCTAGCAGATGTCCCTAGGGAATATGGCTCTTCTCAGTCATTTTTAA
CAGAAGTTAATTTTGCTGTTGAAAATGGAGACTCTGGTTCCCGATATTATTATTCCGATA
ATTATTTTGATGGTCAGAGGAGGCGCCAGCTTGGAGATCGCACACATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55623708|ref|XP_517583.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55623708|ref|XP_517583.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               140-419, - strand, RNAz p=0.972859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-419, - strand, RNAz p=0.972859

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               100-468, gnl|bosTau2|chr10 (29078457-29078089)
               

               
               100-468, gnl|Hg17|chr14 (50202087-50201722)
               

               
               100-468, gnl|Mm7|chr12 (67925644-67925276)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-468, gnl|bosTau2|chr10 (29078457-29078089)
               

               
               100-468, gnl|Hg17|chr14 (50202087-50201722)
               

               
               100-468, gnl|Mm7|chr12 (67925644-67925276)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)
               

               
               ldo (0.0970026)

	100-468, gnl\|bosTau2\|chr10 (29078457-29078089)
	100-468, gnl\|Hg17\|chr14 (50202087-50201722)
	100-468, gnl\|Mm7\|chr12 (67925644-67925276)