Non-Coding RNA Search

Ss1.1-rpldo0127_p17.5

Sequence:


               
               GCCTGTCTTGTTGCCCCAAGTGAAGGAGGGGTGCCTTTGACCCATGCTTGGGGCCAGAAT
CTGGGATCTTAAGCTGAGAATGGAAGGCAGGGTCTACTCCTGAGTGGCAGTGGCTCTGGT
GAAGGAAACTTGACCAGTGTGACTATAGAAACAGGAAAAGACTCCAAGCTAGAAATGCTG
TTGGGACTACAGGGAACACCATCACTTAATGGAACAGTTCTGCTCCTGTACAAGGGGAGT
TGGTCCAAGTCCTAGGCCACATATGTCACAATTGTTTTTGACCCTCAGTAGCTTTTATAC
TCATGTAAAATATTAAAGTTACCCCTTTCATATTTGGGTCCTTCAGAGCGCTCCACTTAC
TCTGGGCTCCTGCTAACTATGCACAACATCTCAGAAGATGGCATACAAAACTATTTTTCT
AACTGTAGCACAGGTAATTTGGGGTGGGAGGCTTGGGATGTACCTAAATGTGGCAAATGA
TGTACTGTCCACCTTGAGGGATGAAAGGGAAACTGTGCACTTGAGTTTAATTCACCATTG
GATAGCTTGTGCCAGACAGAACACACATCAAATATCCAAGAAGCAAAATTGATCATTAGC
TTAATTTGGGGGCTTACTCTAGAGGGGTTACCTTGTCTAGAACACAGGCACCTGCAAGTA
GAATGTGAGCTGATTTCTTGGCAGTCAGATCTTAGCCCTTTGAACTGTTCTGGGCAGCAC
AACTCCTAGGTCCACATGGTTGATGTAAGTATCATTAAGTAGTGAAATTGTCTGGTATAT
ATCCTATATGCCAATAGTGTATACCTGTATGTGTGGGATTTGCTAATATACCCATTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGTCTTGTTGCCCCAAGTGAAGGAGGGGTGCCTTTGACCCATGCTTGGGGCCAGAAT
CTGGGATCTTAAGCTGAGAATGGAAGGCAGGGTCTACTCCTGAGTGGCAGTGGCTCTGGT
GAAGGAAACTTGACCAGTGTGACTATAGAAACAGGAAAAGACTCCAAGCTAGAAATGCTG
TTGGGACTACAGGGAACACCATCACTTAATGGAACAGTTCTGCTCCTGTACAAGGGGAGT
TGGTCCAAGTCCTAGGCCACATATGTCACAATTGTTTTTGACCCTCAGTAGCTTTTATAC
TCATGTAAAATATTAAAGTTACCCCTTTCATATTTGGGTCCTTCAGAGCGCTCCACTTAC
TCTGGGCTCCTGCTAACTATGCACAACATCTCAGAAGATGGCATACAAAACTATTTTTCT
AACTGTAGCACAGGTAATTTGGGGTGGGAGGCTTGGGATGTACCTAAATGTGGCAAATGA
TGTACTGTCCACCTTGAGGGATGAAAGGGAAACTGTGCACTTGAGTTTAATTCACCATTG
GATAGCTTGTGCCAGACAGAACACACATCAAATATCCAAGAAGCAAAATTGATCATTAGC
TTAATTTGGGGGCTTACTCTAGAGGGGTTACCTTGTCTAGAACACAGGCACCTGCAAGTA
GAATGTGAGCTGATTTCTTGGCAGTCAGATCTTAGCCCTTTGAACTGTTCTGGGCAGCAC
AACTCCTAGGTCCACATGGTTGATGTAAGTATCATTAAGTAGTGAAATTGTCTGGTATAT
ATCCTATATGCCAATAGTGTATACCTGTATGTGTGGGATTTGCTAATATACCCATTTCAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr7 (653006-652173)
               

               
               1-840, gnl|Hg17|chr5 (179272105-179271280)
               

               
               1-840, gnl|Mm7|chr11 (50081623-50082456)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr7 (653006-652173)
               

               
               1-840, gnl|Hg17|chr5 (179272105-179271280)
               

               
               1-840, gnl|Mm7|chr11 (50081623-50082456)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-840, gnl\|bosTau2\|chr7 (653006-652173)
	1-840, gnl\|Hg17\|chr5 (179272105-179271280)
	1-840, gnl\|Mm7\|chr11 (50081623-50082456)

	fco (0.157208)
	hyp (0.142837)
	ssp (0.13552)
	ebs (0.118301)
	ecc (0.115035)
	ldo (0.0970026)