Non-Coding RNA Search

Ss1.1-rpldo0130_i19.5

Sequence:


               
               ACAACAAAGCCCAGTGGAAGAGCCGTTGCCCAGGCAAGCACAGAAGCACAGCGGTAGCAG
GTGGCGGTGGTGTCCAGACCACACCAGGCCCAGGGACTGAGGACGAGGAGCAGACTGTGA
CCGGAGGCGACGCCCCATAGTGCCAGCCAGGCCCGCCCCTGCTCTGCACACTGAGAGTGA
CAGCCTCCTTGAGCAGAGGCCTCTGAGAGGGCAGAAGCCCTAAGGGGCTCTTGCCGCTAA
ACCCAGCCCCTCTCTGGGTGTCGTCCTGGGGCATTTTTGGAACCCCACTTCCCTGAATCC
CACTCACCGGCCTCCCTCCTTTTTCCAAGTGTACAGAAGCCATGCGTCACCTCAGCATTA
GCTGCCAAAATGAGCAACTCCATTCTGCAGTGAGGGAGCTGATTCCAGGGGCTGGCTTGG
CCCTCGAGGAGAAACTGGGGAAAAAGAAAGAGGTGCTTCTGCTGTGGCCCCCCTCGGGCC
CTGGGTCACACTGTGACAGGTGGCACTTCCCAAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACAAAGCCCAGTGGAAGAGCCGTTGCCCAGGCAAGCACAGAAGCACAGCGGTAGCAG
GTGGCGGTGGTGTCCAGACCACACCAGGCCCAGGGACTGAGGACGAGGAGCAGACTGTGA
CCGGAGGCGACGCCCCATAGTGCCAGCCAGGCCCGCCCCTGCTCTGCACACTGAGAGTGA
CAGCCTCCTTGAGCAGAGGCCTCTGAGAGGGCAGAAGCCCTAAGGGGCTCTTGCCGCTAA
ACCCAGCCCCTCTCTGGGTGTCGTCCTGGGGCATTTTTGGAACCCCACTTCCCTGAATCC
CACTCACCGGCCTCCCTCCTTTTTCCAAGTGTACAGAAGCCATGCGTCACCTCAGCATTA
GCTGCCAAAATGAGCAACTCCATTCTGCAGTGAGGGAGCTGATTCCAGGGGCTGGCTTGG
CCCTCGAGGAGAAACTGGGGAAAAAGAAAGAGGTGCTTCTGCTGTGGCCCCCCTCGGGCC
CTGGGTCACACTGTGACAGGTGGCACTTCCCAAGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-432, - strand, RNAz p=0.728948

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-432, - strand, RNAz p=0.728948

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr9 (43905507-43905010)
               

               
               1-516, gnl|Hg17|chr6 (136554541-136555024)
               

               
               1-516, gnl|Mm7|chr10 (20125200-20124765)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr9 (43905507-43905010)
               

               
               1-516, gnl|Hg17|chr6 (136554541-136555024)
               

               
               1-516, gnl|Mm7|chr10 (20125200-20124765)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               ldo (0.0970026)

	1-516, gnl\|bosTau2\|chr9 (43905507-43905010)
	1-516, gnl\|Hg17\|chr6 (136554541-136555024)
	1-516, gnl\|Mm7\|chr10 (20125200-20124765)