Non-Coding RNA Search

Ss1.1-rpldo0130_j19.5

Sequence:


               
               GTAATCCAGAGAAATGGAGCCATGAGCCCAATTCCAGAGAGGAAGGGGGAAAAGGAGAAA
AGGCCTGGGTGCAGAGTCTTACACAGAGAGAGCAGAGAGGGAATCAGAGATGGGTTATTA
CCCTGAATAGAGCCTTGTGCACTAATCCTTGCCTCCAAAGAGTGGGCCAACACACAACAC
AGAAAAGACTCAAAGCCTCTGTCTTTGGCAAACAGGAATCCAGCCCGCCTGTCTACAGCT
GCTTTACTGAGCAGCTCACTGGTCTCTGTCTCACTCACATACTCGCTATCTATAGCATCC
ACCCCTCAACTTCCTGCCCTTCTACTTTTAAAATCTTTCACTTACATTTTTACTTCCTTA
TTGTAGTGTTCATATCTATGTATGTCTTGATATCTGTGGGCATATAGCTGTCTCTTGTAA
ACACCTGCGATTTGTATGTGTATCTAAGCATACGTGGGAATTTTTCTGAATGTAAGTAGT
TTTGAAATGTCTGTATATCTATCTTTATCTACATTTGACAAACTAAGTATGTAAATATGA
GTGTTGTGTGGGGGAGAGGGGTGTGGCTGTGGCCTCAGGCTGACACACAAAGGATAGTGG
AGGAATCCTTAAGTCCTCTTTCCCACTCTCATGTTTAGGTAAATACTGAAGAATGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAATCCAGAGAAATGGAGCCATGAGCCCAATTCCAGAGAGGAAGGGGGAAAAGGAGAAA
AGGCCTGGGTGCAGAGTCTTACACAGAGAGAGCAGAGAGGGAATCAGAGATGGGTTATTA
CCCTGAATAGAGCCTTGTGCACTAATCCTTGCCTCCAAAGAGTGGGCCAACACACAACAC
AGAAAAGACTCAAAGCCTCTGTCTTTGGCAAACAGGAATCCAGCCCGCCTGTCTACAGCT
GCTTTACTGAGCAGCTCACTGGTCTCTGTCTCACTCACATACTCGCTATCTATAGCATCC
ACCCCTCAACTTCCTGCCCTTCTACTTTTAAAATCTTTCACTTACATTTTTACTTCCTTA
TTGTAGTGTTCATATCTATGTATGTCTTGATATCTGTGGGCATATAGCTGTCTCTTGTAA
ACACCTGCGATTTGTATGTGTATCTAAGCATACGTGGGAATTTTTCTGAATGTAAGTAGT
TTTGAAATGTCTGTATATCTATCTTTATCTACATTTGACAAACTAAGTATGTAAATATGA
GTGTTGTGTGGGGGAGAGGGGTGTGGCTGTGGCCTCAGGCTGACACACAAAGGATAGTGG
AGGAATCCTTAAGTCCTCTTTCCCACTCTCATGTTTAGGTAAATACTGAAGAATGTTTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-658, gnl|bosTau2|chrX (24073813-24073132)
               

               
               2-658, gnl|Hg17|chrX (71583087-71582397)
               

               
               2-658, gnl|Mm7|chrX (97842685-97841908)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-658, gnl|bosTau2|chrX (24073813-24073132)
               

               
               2-658, gnl|Hg17|chrX (71583087-71582397)
               

               
               2-658, gnl|Mm7|chrX (97842685-97841908)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               sme (0.610874)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	2-658, gnl\|bosTau2\|chrX (24073813-24073132)
	2-658, gnl\|Hg17\|chrX (71583087-71582397)
	2-658, gnl\|Mm7\|chrX (97842685-97841908)

	sme (0.610874)
	tbr (0.154178)
	ssp (0.13552)
	ste (0.135208)
	ldo (0.0970026)