Non-Coding RNA Search

Ss1.1-rpldo0131_b2.5

Sequence:


               
               GCATTCATGGCAACAAGACTGGTGGCAGCTGATAGGACCTGTGGGCCCTCNAGTTGCGGC
ATGTTTACTCTCCTATCATCTGTCACGGCTGCTGTCAGCGGCTTCCTGGTGGGATATGAA
CTTGGGCTCATCTCTGGGGCTCTCCTGCAGATAAGAACCTTGTTGGCCCTGACCTGCCAC
GAGCAGGAGATGGTGGTGAGCTCCCTCCTCATCGGGGCCTTACTGGCCTCTCTTGTCGGA
GGGGTCGTGATTGACAGGTACGGAAGAAGGGCTGCCATCATCCTGTCGTCCTGCCTGCTT
GGAGTTGGAAGCCTGGTCTTGATCGTCACTTTGTCTTATGCGGCTCTCATAGTGGGACGC
ATTGCCATAGGGGTTTCCATTTCACTCTCTTCCATCGCTACCTGCGTTTACATCGCAGAG
ATTGCTCCCCAACACCGACGAGGGCTTCTCGTGTCACTGAACGAGCTGATGATTGTCATT
GGCATTCTTTTCGCCTATGTTTCGAATTACACATTTGCCAACATTTCCCACGGCTGGAAG
TACATGCCCGGTCTCGTTATCCCCTTGGGAGTTTTGCAAGCCATTGCCATGTACTTTCTT
CCTCCAAGTCCTCGGTTTCTGGTGATGAAGGGACAGGAGGAAGCTGCTAGCAAGGTTCTC
GGAAAGTTGAGGGCCGTCTCCGATCCAACGGAAGAGCTCACGGCGATAAAATCTTCCCTG
AAAGATGAATATCAGTACAGTTTTTGGGATCTCTTCCGGTCAAAGGACAACATGAGGACT
CGAATCATGATAGGCTTGACACTGGTGTTTTTTGTACAAATCACAGGCCAGCCAAACATA
TTATTTTATGCATCCACTGTTTTAAAGTCTGTTGGCTTCCAGAGCAATGAGGCAGCTAGC
CTCGCCTCCACGGGGGTTGGGGTGGTCAAGGTCATTGGCACCATCCCTGCCACCCTTCTT
GTAGACCACGTGGGGAGCAAAACCTTCCTCTGTGTTGGCTCCTCTGTGATGGCAGTTTCC
TTGGTGACCATGGGCATCGTGAACCTCAACATCCACATGAATGTCACCAATATCTGCAGA
AACTATGGTCCTATCAACCAGTCCCTGGATGAGTCTGTGTTTTATGGACCAGGTAACCTG
TCAGCCAGCAATGACACTCTTAGAGAATCCTTTAAAGGAATGACTTCCCATGGCAGAAGC
TCAGTAATGCCCGTAAGAAACGACATGGATAAGAGAAGAGAAATGACCTCGGCATCCTTA
CCAAAGGCTGGACCAAGCCAAACTGAATACCAGGTGGTCACAGACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATTCATGGCAACAAGACTGGTGGCAGCTGATAGGACCTGTGGGCCCTCNAGTTGCGGC
ATGTTTACTCTCCTATCATCTGTCACGGCTGCTGTCAGCGGCTTCCTGGTGGGATATGAA
CTTGGGCTCATCTCTGGGGCTCTCCTGCAGATAAGAACCTTGTTGGCCCTGACCTGCCAC
GAGCAGGAGATGGTGGTGAGCTCCCTCCTCATCGGGGCCTTACTGGCCTCTCTTGTCGGA
GGGGTCGTGATTGACAGGTACGGAAGAAGGGCTGCCATCATCCTGTCGTCCTGCCTGCTT
GGAGTTGGAAGCCTGGTCTTGATCGTCACTTTGTCTTATGCGGCTCTCATAGTGGGACGC
ATTGCCATAGGGGTTTCCATTTCACTCTCTTCCATCGCTACCTGCGTTTACATCGCAGAG
ATTGCTCCCCAACACCGACGAGGGCTTCTCGTGTCACTGAACGAGCTGATGATTGTCATT
GGCATTCTTTTCGCCTATGTTTCGAATTACACATTTGCCAACATTTCCCACGGCTGGAAG
TACATGCCCGGTCTCGTTATCCCCTTGGGAGTTTTGCAAGCCATTGCCATGTACTTTCTT
CCTCCAAGTCCTCGGTTTCTGGTGATGAAGGGACAGGAGGAAGCTGCTAGCAAGGTTCTC
GGAAAGTTGAGGGCCGTCTCCGATCCAACGGAAGAGCTCACGGCGATAAAATCTTCCCTG
AAAGATGAATATCAGTACAGTTTTTGGGATCTCTTCCGGTCAAAGGACAACATGAGGACT
CGAATCATGATAGGCTTGACACTGGTGTTTTTTGTACAAATCACAGGCCAGCCAAACATA
TTATTTTATGCATCCACTGTTTTAAAGTCTGTTGGCTTCCAGAGCAATGAGGCAGCTAGC
CTCGCCTCCACGGGGGTTGGGGTGGTCAAGGTCATTGGCACCATCCCTGCCACCCTTCTT
GTAGACCACGTGGGGAGCAAAACCTTCCTCTGTGTTGGCTCCTCTGTGATGGCAGTTTCC
TTGGTGACCATGGGCATCGTGAACCTCAACATCCACATGAATGTCACCAATATCTGCAGA
AACTATGGTCCTATCAACCAGTCCCTGGATGAGTCTGTGTTTTATGGACCAGGTAACCTG
TCAGCCAGCAATGACACTCTTAGAGAATCCTTTAAAGGAATGACTTCCCATGGCAGAAGC
TCAGTAATGCCCGTAAGAAACGACATGGATAAGAGAAGAGAAATGACCTCGGCATCCTTA
CCAAAGGCTGGACCAAGCCAAACTGAATACCAGGTGGTCACAGACCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41400463|gb|AAS07046.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41400463|gb|AAS07046.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               132-291, - strand, RNAz p=0.648169
               

               
               532-651, + strand, RNAz p=0.544982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-291, - strand, RNAz p=0.648169
               

               
               532-651, + strand, RNAz p=0.544982

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC070149, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC070149, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               53-1308, gnl|bosTau2|chr9 (40624269-40625524)
               

               
               53-1308, gnl|Hg17|chr6 (134392552-134391297)
               

               
               53-1308, gnl|Mm7|chr10 (22420071-22421329)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               53-1308, gnl|bosTau2|chr9 (40624269-40625524)
               

               
               53-1308, gnl|Hg17|chr6 (134392552-134391297)
               

               
               53-1308, gnl|Mm7|chr10 (22420071-22421329)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               ldo (0.0970026)

	132-291, - strand, RNAz p=0.648169
	532-651, + strand, RNAz p=0.544982

	53-1308, gnl\|bosTau2\|chr9 (40624269-40625524)
	53-1308, gnl\|Hg17\|chr6 (134392552-134391297)
	53-1308, gnl\|Mm7\|chr10 (22420071-22421329)