Ss1.1-rpldo0131_c21.5
|
GATTCGACAGATTTTAATTGAATTACATGGGATGACCTCAGAGCGCCAATTCTGGACAGT
ATCAAATAAGTGGGAGGTACCTTCTGTTTATAGTGGTGTTATCCTGGGAATTAAAGACAA
TTTAACAAGAGATTTGGTTTACATTCTCATGGCCAAAGGTTTACACTGCAGCACTGTTAA
GGACTTTTCCCATGCTAAACAGCTATTTGCTGCTTGTTTGGAGTTGGTGACAGAGTTCTC
ACCAAAACTTCGTCAGGTCATGCTGAATGAGATGCTGCTTTTGGATATTCACACACATGA
AGCTGGAACAGGGCAGTCAGGAGAGAGACCTCCTTCTGATCTTATTAGTAGAGTGCGAGG
ATATCTGGAAATGAGGCTTCCTGATATTCCTCTTCGTCAGGTTATTGCCGAGGAGTGTGT
TGCTTTTATGTTAAACTGGAAAGAAAATGAGTACCTTACGCTTCAGGTTCCTGCATTTCT
GCTTCAGAGTAATCCATATGTAAAGCTTGGACAGCTTTTAGCAGCTACATGCAAAGAACT
TCCAGGCCCTAAAGAAAGCAGACG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GATTCGACAGATTTTAATTGAATTACATGGGATGACCTCAGAGCGCCAATTCTGGACAGT
ATCAAATAAGTGGGAGGTACCTTCTGTTTATAGTGGTGTTATCCTGGGAATTAAAGACAA
TTTAACAAGAGATTTGGTTTACATTCTCATGGCCAAAGGTTTACACTGCAGCACTGTTAA
GGACTTTTCCCATGCTAAACAGCTATTTGCTGCTTGTTTGGAGTTGGTGACAGAGTTCTC
ACCAAAACTTCGTCAGGTCATGCTGAATGAGATGCTGCTTTTGGATATTCACACACATGA
AGCTGGAACAGGGCAGTCAGGAGAGAGACCTCCTTCTGATCTTATTAGTAGAGTGCGAGG
ATATCTGGAAATGAGGCTTCCTGATATTCCTCTTCGTCAGGTTATTGCCGAGGAGTGTGT
TGCTTTTATGTTAAACTGGAAAGAAAATGAGTACCTTACGCTTCAGGTTCCTGCATTTCT
GCTTCAGAGTAATCCATATGTAAAGCTTGGACAGCTTTTAGCAGCTACATGCAAAGAACT
TCCAGGCCCTAAAGAAAGCAGACG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
180-386, gnl|bosTau2|chr14 (42807934-42808140) |
|
180-386, gnl|canFam2|chr29 (42496446-42496671) |
|
180-386, gnl|danRer3|chr19 (14394321-14394543) |
|
180-386, gnl|dasNov1|scaffold_116355 (757-555) |
|
180-386, gnl|echTel1|scaffold_208743 (3518-3293) |
|
180-386, gnl|fr1|chrUn (215146773-215146555) |
|
180-386, gnl|galGal2|chr2 (125702169-125702387) |
|
180-386, gnl|hg17|chr8 (95938167-95938389) |
|
180-386, gnl|Hg17|chr8 (95938179-95938385) |
|
180-386, gnl|loxAfr1|scaffold_42665 (8111-7886) |
|
180-386, gnl|mm7|chr4 (11152968-11152744) |
|
180-386, gnl|Mm7|chr4 (11152952-11152746) |
|
180-386, gnl|monDom2|scaffold_3 (70749203-70748987) |
|
180-386, gnl|oryCun1|scaffold_133926 (685-460) |
|
180-386, gnl|panTro1|chr7 (98172028-98172250) |
|
180-386, gnl|rheMac2|chr8 (97430608-97430830) |
|
180-386, gnl|rn3|chr5 (25065243-25065020) |
|
180-386, gnl|tetNig1|chr21 (592399-592623) |
|
180-386, gnl|xenTro1|scaffold_3 (6273306-6273096) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
180-386, gnl|bosTau2|chr14 (42807934-42808140) |
|
180-386, gnl|canFam2|chr29 (42496446-42496671) |
|
180-386, gnl|danRer3|chr19 (14394321-14394543) |
|
180-386, gnl|dasNov1|scaffold_116355 (757-555) |
|
180-386, gnl|echTel1|scaffold_208743 (3518-3293) |
|
180-386, gnl|fr1|chrUn (215146773-215146555) |
|
180-386, gnl|galGal2|chr2 (125702169-125702387) |
|
180-386, gnl|hg17|chr8 (95938167-95938389) |
|
180-386, gnl|Hg17|chr8 (95938179-95938385) |
|
180-386, gnl|loxAfr1|scaffold_42665 (8111-7886) |
|
180-386, gnl|mm7|chr4 (11152968-11152744) |
|
180-386, gnl|Mm7|chr4 (11152952-11152746) |
|
180-386, gnl|monDom2|scaffold_3 (70749203-70748987) |
|
180-386, gnl|oryCun1|scaffold_133926 (685-460) |
|
180-386, gnl|panTro1|chr7 (98172028-98172250) |
|
180-386, gnl|rheMac2|chr8 (97430608-97430830) |
|
180-386, gnl|rn3|chr5 (25065243-25065020) |
|
180-386, gnl|tetNig1|chr21 (592399-592623) |
|
180-386, gnl|xenTro1|scaffold_3 (6273306-6273096) |
|
spl (0.143184) |
|
ldo (0.0970026) |
|
spl (0.143184) |
|
ldo (0.0970026) |
