Ss1.1-rpldo0132_a17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTTGGCGAAGTTTAGCATTAATAGTCTTTCTGACGTGTGTTTTTATCAGGTTTAGAGCC CATGTGGAGTCTTCTCTTCATGGGTTTTCATAATATTTTAAAACTATTTGTTTAGTAATG GTTTTTGTTTGTTTTTTTAAGTAAAGGTTAATCTTGATGCTATACATAGTAATCTTTCTA AAATTGTAATGCTGACCATACTGCTGTCAGAATAATGTTAGGCATATGCTCTTTGCTAAA TATATATGTACAGAATATGTGGAAGTTAAGAATTGATTAGACTAGTGGATTTAGGAGTAC TGGAGGGGGTGGGGGGAGAGGGAAATGACAAATGTAGAATATACTGTAAACGTTCAGTTT GTTGCTTTAAAGAAACAAACTGATGTCTGAATTTTTGCTGTTTCAGTTTTTTTAGAGATT TTATCCTACTTTTTTTTCTTTGCATCTTCTATCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTTGGCGAAGTTTAGCATTAATAGTCTTTCTGACGTGTGTTTTTATCAGGTTTAGAGCC CATGTGGAGTCTTCTCTTCATGGGTTTTCATAATATTTTAAAACTATTTGTTTAGTAATG GTTTTTGTTTGTTTTTTTAAGTAAAGGTTAATCTTGATGCTATACATAGTAATCTTTCTA AAATTGTAATGCTGACCATACTGCTGTCAGAATAATGTTAGGCATATGCTCTTTGCTAAA TATATATGTACAGAATATGTGGAAGTTAAGAATTGATTAGACTAGTGGATTTAGGAGTAC TGGAGGGGGTGGGGGGAGAGGGAAATGACAAATGTAGAATATACTGTAAACGTTCAGTTT GTTGCTTTAAAGAAACAAACTGATGTCTGAATTTTTGCTGTTTCAGTTTTTTTAGAGATT TTATCCTACTTTTTTTTCTTTGCATCTTCTATCCCA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-152, - strand, RNAz p=0.592454 | |
| 306-456, + strand, RNAz p=0.997789 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-152, - strand, RNAz p=0.592454 | |
| 306-456, + strand, RNAz p=0.997789 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005900, + |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 1-456, gnl|bosTau2|chr17 (14693687-14693236) | |
| 1-456, gnl|Hg17|chr4 (146837054-146837514) | |
| 1-456, gnl|Mm7|chr8 (77879537-77879080) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-456, gnl|bosTau2|chr17 (14693687-14693236) | |
| 1-456, gnl|Hg17|chr4 (146837054-146837514) | |
| 1-456, gnl|Mm7|chr8 (77879537-77879080) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fhi (0.169578) | |
| sug (0.127291) | |
| bla (0.124347) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| sug (0.127291) | |
| bla (0.124347) | |
| jca (0.11396) | |
| ldo (0.0970026) |