Non-Coding RNA Search

Ss1.1-rpldo0133_h15.5

Sequence:


               
               TTCTAGCTATTACTGTGGAAGACCTCCAGTACAAGATAAGTTGCCCTTGAACATGTGGTT
TTAAATGATATGCCATGTTACTAGCAATGGTGATTTTAATTGCAATATTTTCGATTGATG
AGGATGATTTGTAAAGATGAGGTTTGTGTTGTATCAATTCTGTGTGTTAGAGAAGTTCTT
TGGTTTTTATCCAGGTGTCATCTTGGGGAAGAAGTCAGAAAAATTAAATCTGCATCCGTC
ATAGTTTAGAGTTCTAAAATGTGAATCTACACCATACATGGGCATTAACATTTTAAATCG
CCTGTTTGGAGAATGTGTTAGCAGCATAGCTATGTTCAACTAAGGAAATGCGAAATACCA
GAAGTTTCAAGAGCCTTGGAACAGATTTACAGGGGAACTATATGTGTATGTGTATATTTT
ATTCAACACCCATCTGCACTATCAGTGTTGCACTAATGTGGAAATTTGATGAACTATATT
GCTGAGACTGTATATCTGCAGGTCATTCCTGGTTAGATTGTTTTAAAGACAATCTCAAAG
ATCTGAGGTTTTAAGATACTTTGATTGGTTTGAAAATATACAGTCCTCTTGAAGGAATTG
CTGTCAGACATGAAGTTGCTCAGAGCTGTCTTTATTCTCTTCTGGGTCAAGGTTAACAGT
TTCTAAATGATTGCAAATTCACTTAAACAATACATTTACAAAGCCATTTTACATGCATTA
AACGAGGGCTACATATTATGTTTTACAAATACTAGCACTTTTTTTTTTCTTTTCCTGTTA
TGTACTTAGTGTTAGAGGGTCAAAATAGTCTTTCGGCTTAGCATCTCTTAAACCATCCCT
GCAAGTGTAGCAGGATTATTACATTTACAGTACTTTAATACTTGTATAAACTATGCAGAA
ATTTTTAATAAAGTGTAATATATTTTATAAGCTAATAAGACTGAATGGGTAAAGGTTTTT
AGCATGCATTAGTACACTTGCAAATACTGAAAACATTTTGGTAATCTTTCTTACTAAAGA
TGTGAATGTTTAATGTACCTTCTCTGTTTCTACTCTGTAGTCCAATGGGAATTCAGTAAT
GACATTTTGTCATGTCAAACTGTGAACATAAATTTGTACTGTACAGTCCTCATGTACTAT
ACACAGTATGCAATATATGTATTATATACTTGTTAATAAAATCATCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTAGCTATTACTGTGGAAGACCTCCAGTACAAGATAAGTTGCCCTTGAACATGTGGTT
TTAAATGATATGCCATGTTACTAGCAATGGTGATTTTAATTGCAATATTTTCGATTGATG
AGGATGATTTGTAAAGATGAGGTTTGTGTTGTATCAATTCTGTGTGTTAGAGAAGTTCTT
TGGTTTTTATCCAGGTGTCATCTTGGGGAAGAAGTCAGAAAAATTAAATCTGCATCCGTC
ATAGTTTAGAGTTCTAAAATGTGAATCTACACCATACATGGGCATTAACATTTTAAATCG
CCTGTTTGGAGAATGTGTTAGCAGCATAGCTATGTTCAACTAAGGAAATGCGAAATACCA
GAAGTTTCAAGAGCCTTGGAACAGATTTACAGGGGAACTATATGTGTATGTGTATATTTT
ATTCAACACCCATCTGCACTATCAGTGTTGCACTAATGTGGAAATTTGATGAACTATATT
GCTGAGACTGTATATCTGCAGGTCATTCCTGGTTAGATTGTTTTAAAGACAATCTCAAAG
ATCTGAGGTTTTAAGATACTTTGATTGGTTTGAAAATATACAGTCCTCTTGAAGGAATTG
CTGTCAGACATGAAGTTGCTCAGAGCTGTCTTTATTCTCTTCTGGGTCAAGGTTAACAGT
TTCTAAATGATTGCAAATTCACTTAAACAATACATTTACAAAGCCATTTTACATGCATTA
AACGAGGGCTACATATTATGTTTTACAAATACTAGCACTTTTTTTTTTCTTTTCCTGTTA
TGTACTTAGTGTTAGAGGGTCAAAATAGTCTTTCGGCTTAGCATCTCTTAAACCATCCCT
GCAAGTGTAGCAGGATTATTACATTTACAGTACTTTAATACTTGTATAAACTATGCAGAA
ATTTTTAATAAAGTGTAATATATTTTATAAGCTAATAAGACTGAATGGGTAAAGGTTTTT
AGCATGCATTAGTACACTTGCAAATACTGAAAACATTTTGGTAATCTTTCTTACTAAAGA
TGTGAATGTTTAATGTACCTTCTCTGTTTCTACTCTGTAGTCCAATGGGAATTCAGTAAT
GACATTTTGTCATGTCAAACTGTGAACATAAATTTGTACTGTACAGTCCTCATGTACTAT
ACACAGTATGCAATATATGTATTATATACTTGTTAATAAAATCATCAG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               470-588, - strand, RNAz p=0.715737
               

               
               824-943, - strand, RNAz p=0.696218
               

               
               984-1188, - strand, RNAz p=0.772804

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-588, - strand, RNAz p=0.715737
               

               
               824-943, - strand, RNAz p=0.696218
               

               
               984-1188, - strand, RNAz p=0.772804

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               791-914, + strand, RNAmicro p=0.918623

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               791-914, + strand, RNAmicro p=0.918623

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1188, gnl|bosTau2|chr6 (30038343-30037155)
               

               
               1-1188, gnl|Hg17|chr4 (38524059-38525220)
               

               
               1-1188, gnl|Mm7|chr5 (64186569-64187705)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1188, gnl|bosTau2|chr6 (30038343-30037155)
               

               
               1-1188, gnl|Hg17|chr4 (38524059-38525220)
               

               
               1-1188, gnl|Mm7|chr5 (64186569-64187705)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               lin (0.436808)
               

               
               sin (0.349895)
               

               
               jej (0.197844)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               sin (0.349895)
               

               
               jej (0.197844)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	470-588, - strand, RNAz p=0.715737
	824-943, - strand, RNAz p=0.696218
	984-1188, - strand, RNAz p=0.772804

	1-1188, gnl\|bosTau2\|chr6 (30038343-30037155)
	1-1188, gnl\|Hg17\|chr4 (38524059-38525220)
	1-1188, gnl\|Mm7\|chr5 (64186569-64187705)

	lin (0.436808)
	sin (0.349895)
	jej (0.197844)
	rec (0.17307)
	fco (0.157208)
	eli (0.151814)
	isp (0.150376)
	liv (0.146284)
	hyp (0.142837)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	pgl (0.118483)
	cbl (0.114797)
	ldo (0.0970026)