Ss1.1-rpldo0135_d11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGAAAATACCTCAAGTAAAGCTACATTTGTTGGAGGATCTTTCAACCTAAAATAATAT AAAGGATGTCAAACTTGGGACAATTTGACTCTGACTTTTACCAATCTAATTATACCATTG AAAATCAGGAGCAGAGTGGTAATGAGCCTCATGCCTATGGAAATCTTTACGAATCTAGAA AAACTTGGAATTAATTTTGACCACATATGGCAAAAAACCTTGACGGTGTTAAACCCACTG AAACCAGCAGATGGCAGCATTATGAATGAAACAGACCTCACTGGGCCTATCCTGTTCTTC GTGGCCCTAGGAACTACCTTACTTCTGGCAGGAAAAGTCCAGTTTGGTTACGTGTATGGC ATGAGTGCCATTGGCTGCCTAGGGATTCATGGCTTACTAAACTTGATGAGCTCTTCAGGG GTGTCCTATGGCTGCGTGGCAAGTGTCCTGGGTTACTGCCTGCTCCCCATGGTCATCCTG TCCAGCTGTGCCATCTTCTTTTCACTGCAGGACACCTTTGGAACTGTGTTGGCACTGGTC GTCATTGGCTGGTGTAGTCTCTCAGCCTCTAAAATCTTCATTTCAGCCTTGGACATGGAA GGACAGCAGCTTCTCATTGCCTACCCTTGTGCCTTGCTTTATGGACTTTTTGCCCTTCTA ACAGTTTTCTGAAGAGTATTTGAGACGGCATTACAGGATTCTATTTGTTTCCTGCTCAGA TTAGCCTGGAAATATATTAGCATTTGAATTTGGTAATATGATTTCGATTTTATTGCTGTT GAGAGAATAATAAGCAGAGAGACAAAACAGCACTTAAGGATGGTTCTCTAATAGGCTTTT TGGTTTGCATCATGATTTGCTTTCTGTTTGGTGCATTAAAACATTTTAGAATTCTTTAAA CTGAAACAGAATATGGTTGTTGTACTGATGGACCCTGCTTTTCTCGATGGATGTATTTCT GAGAATTGTAAGTAAATAAAATCATATGCTGACTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGAAAATACCTCAAGTAAAGCTACATTTGTTGGAGGATCTTTCAACCTAAAATAATAT AAAGGATGTCAAACTTGGGACAATTTGACTCTGACTTTTACCAATCTAATTATACCATTG AAAATCAGGAGCAGAGTGGTAATGAGCCTCATGCCTATGGAAATCTTTACGAATCTAGAA AAACTTGGAATTAATTTTGACCACATATGGCAAAAAACCTTGACGGTGTTAAACCCACTG AAACCAGCAGATGGCAGCATTATGAATGAAACAGACCTCACTGGGCCTATCCTGTTCTTC GTGGCCCTAGGAACTACCTTACTTCTGGCAGGAAAAGTCCAGTTTGGTTACGTGTATGGC ATGAGTGCCATTGGCTGCCTAGGGATTCATGGCTTACTAAACTTGATGAGCTCTTCAGGG GTGTCCTATGGCTGCGTGGCAAGTGTCCTGGGTTACTGCCTGCTCCCCATGGTCATCCTG TCCAGCTGTGCCATCTTCTTTTCACTGCAGGACACCTTTGGAACTGTGTTGGCACTGGTC GTCATTGGCTGGTGTAGTCTCTCAGCCTCTAAAATCTTCATTTCAGCCTTGGACATGGAA GGACAGCAGCTTCTCATTGCCTACCCTTGTGCCTTGCTTTATGGACTTTTTGCCCTTCTA ACAGTTTTCTGAAGAGTATTTGAGACGGCATTACAGGATTCTATTTGTTTCCTGCTCAGA TTAGCCTGGAAATATATTAGCATTTGAATTTGGTAATATGATTTCGATTTTATTGCTGTT GAGAGAATAATAAGCAGAGAGACAAAACAGCACTTAAGGATGGTTCTCTAATAGGCTTTT TGGTTTGCATCATGATTTGCTTTCTGTTTGGTGCATTAAAACATTTTAGAATTCTTTAAA CTGAAACAGAATATGGTTGTTGTACTGATGGACCCTGCTTTTCTCGATGGATGTATTTCT GAGAATTGTAAGTAAATAAAATCATATGCTGACTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 54-181, gnl|bosTau2|chr6 (33372358-33372231) | |
| 54-181, gnl|canFam2|chr13 (44098775-44099022) | |
| 54-181, gnl|dasNov1|scaffold_12509 (58867-58619) | |
| 54-181, gnl|echTel1|scaffold_159966 (3740-3499) | |
| 54-181, gnl|hg17|chr4 (44492916-44493162) | |
| 54-181, gnl|Hg17|chr4 (44493057-44492930) | |
| 54-181, gnl|loxAfr1|scaffold_947 (108790-108550) | |
| 54-181, gnl|mm7|chr5 (68897637-68897888) | |
| 54-181, gnl|Mm7|chr5 (68897775-68897650) | |
| 54-181, gnl|monDom2|scaffold_26 (10360204-10360474) | |
| 54-181, gnl|panTro1|chr3 (47197745-47197991) | |
| 54-181, gnl|rheMac2|chr5 (39791966-39792212) | |
| 54-181, gnl|rn3|chr14 (41105395-41105144) | |
| 182-328, gnl|bosTau2|chr6 (33355211-33355065) | |
| 182-328, gnl|canFam2|chr13 (44082577-44082680) | |
| 182-328, gnl|danRer3|chr21 (29176666-29176550) | |
| 182-328, gnl|dasNov1|scaffold_59401 (31168-31061) | |
| 182-328, gnl|echTel1|scaffold_306095 (12175-12061) | |
| 182-328, gnl|fr1|chrUn (216992602-216992699) | |
| 182-328, gnl|galGal2|chr4 (68117149-68117042) | |
| 182-328, gnl|hg17|chr4 (44472335-44472442) | |
| 182-328, gnl|Hg17|chr4 (44472493-44472347) | |
| 182-328, gnl|loxAfr1|scaffold_947 (120189-120082) | |
| 182-328, gnl|mm7|chr5 (68877615-68877722) | |
| 182-328, gnl|Mm7|chr5 (68877773-68877627) | |
| 182-328, gnl|monDom2|scaffold_26 (10345750-10345857) | |
| 182-328, gnl|oryCun1|scaffold_200943 (94126-94018) | |
| 182-328, gnl|panTro1|chr3 (47176739-47176846) | |
| 182-328, gnl|rheMac2|chr5 (39771353-39771450) | |
| 182-328, gnl|rn3|chr14 (41127062-41126955) | |
| 182-328, gnl|tetNig1|chr7 (9154478-9154583) | |
| 182-328, gnl|xenTro1|scaffold_306 (236114-236225) | |
| 510-996, gnl|bosTau2|chr6 (33344451-33343967) | |
| 510-996, gnl|Hg17|chr4 (44465521-44465041) | |
| 510-996, gnl|Mm7|chr5 (68873801-68873312) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-181, gnl|bosTau2|chr6 (33372358-33372231) | |
| 54-181, gnl|canFam2|chr13 (44098775-44099022) | |
| 54-181, gnl|dasNov1|scaffold_12509 (58867-58619) | |
| 54-181, gnl|echTel1|scaffold_159966 (3740-3499) | |
| 54-181, gnl|hg17|chr4 (44492916-44493162) | |
| 54-181, gnl|Hg17|chr4 (44493057-44492930) | |
| 54-181, gnl|loxAfr1|scaffold_947 (108790-108550) | |
| 54-181, gnl|mm7|chr5 (68897637-68897888) | |
| 54-181, gnl|Mm7|chr5 (68897775-68897650) | |
| 54-181, gnl|monDom2|scaffold_26 (10360204-10360474) | |
| 54-181, gnl|panTro1|chr3 (47197745-47197991) | |
| 54-181, gnl|rheMac2|chr5 (39791966-39792212) | |
| 54-181, gnl|rn3|chr14 (41105395-41105144) | |
| 182-328, gnl|bosTau2|chr6 (33355211-33355065) | |
| 182-328, gnl|canFam2|chr13 (44082577-44082680) | |
| 182-328, gnl|danRer3|chr21 (29176666-29176550) | |
| 182-328, gnl|dasNov1|scaffold_59401 (31168-31061) | |
| 182-328, gnl|echTel1|scaffold_306095 (12175-12061) | |
| 182-328, gnl|fr1|chrUn (216992602-216992699) | |
| 182-328, gnl|galGal2|chr4 (68117149-68117042) | |
| 182-328, gnl|hg17|chr4 (44472335-44472442) | |
| 182-328, gnl|Hg17|chr4 (44472493-44472347) | |
| 182-328, gnl|loxAfr1|scaffold_947 (120189-120082) | |
| 182-328, gnl|mm7|chr5 (68877615-68877722) | |
| 182-328, gnl|Mm7|chr5 (68877773-68877627) | |
| 182-328, gnl|monDom2|scaffold_26 (10345750-10345857) | |
| 182-328, gnl|oryCun1|scaffold_200943 (94126-94018) | |
| 182-328, gnl|panTro1|chr3 (47176739-47176846) | |
| 182-328, gnl|rheMac2|chr5 (39771353-39771450) | |
| 182-328, gnl|rn3|chr14 (41127062-41126955) | |
| 182-328, gnl|tetNig1|chr7 (9154478-9154583) | |
| 182-328, gnl|xenTro1|scaffold_306 (236114-236225) | |
| 510-996, gnl|bosTau2|chr6 (33344451-33343967) | |
| 510-996, gnl|Hg17|chr4 (44465521-44465041) | |
| 510-996, gnl|Mm7|chr5 (68873801-68873312) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| ldo (0.679018) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| ese (0.253004) | |
| mas (0.210305) | |
| hea (0.204499) | |
| eye (0.170503) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| ste (0.135208) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.679018) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| ese (0.253004) | |
| mas (0.210305) | |
| hea (0.204499) | |
| eye (0.170503) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ssp (0.13552) | |
| ste (0.135208) |