Ss1.1-rpldo0135_g6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGCACTTTCAGTTAAATGCAGTGAGGAAGATAGGTCAGCCTGGAAACACACGGGAGCT CTCAAAAAGAATATATGTGATGCAGAAAAATCTCATGAAGTGTTATTGAGCTTTGTGATA AGTGAACTATCTAAAGGAAAGTTATACCATGAAGAAGGAACTCAGGAGTGTACAATGGTT AGCCCTATTGCTTGGTCTCCCGAATCCATGGAAAAATATTTACAAGACTTCTGCTTACCT TTCCTCAGAATCACCAGCCTTCTCCAGCACCACCTTTTTGGGGAAGATTTACCTAGCTGC CAGGAAGAAGAAGAATTTTCAGTTCTTTCCAGCTGCCTGGGACTTCTTCCTACATTTTAC CAAACAGAACATCCATTCATCAGTGCCTCCTGTCTGGATTGGCCAGTTCCAGCATTTGAT ATTATATCTCAATGGTGTTTTGAGATAAATTCATTTACTGAAAGACATGCAGAACAAGGA AAGGCCTTGCTTATCCAGGAGTCAAAATGGAAATTGCCACACCTGCTACAGTTGCCTGAA AATTATAATACCATTTTCCAGTACTACCATAGAAAAACCTGTAGTGTCTGCACCAAGGTT CCTAAAGATCCTGCCGTTTGCCTTGTTTGTGGTACTTTTGTATGCCTGAAAGGACTTTGC TGCAAGCAACAAAGTTACTGTGAATGTGTATTGCATTCTCAGAACTGTGGTGCTGGAACA GGAATTTTCCTTTTGATCAATGCATCAGTGATTATCATCATTCGAGGCCACCGCTTCTGC CTCTGGGGTTCTGTGTATTTGGATGCTCATGGAGAGGAAGACCGAGATCTGAGGCGAGGC AAACCTCTCTACATTTGTAAGGAAAGATACAAGGTTCTTGAACAACAGTGGATTTCTCAT ACTTTTGATCACATCAATAAAAGATGGGGTCCGCATTACAATGGGCTGTGACTCACCACC TCAGCATTGCATTGTATCATTTTCATTAAGAATTATCAACAATAAGCTTTAACTTAATTT GGGGGAATAACGCTTTTGCCGAGGGAAAAAAAAAGAAAACATACATTATAAAGCCTTTCC AAAATTAGGTGCTTGGTAATCACATTAATGGTATAATTTTTTTTGTAAGTATCTGGAAAA CGTAACAAGTAACAAGTTAAATCATTCTTTAGTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGCACTTTCAGTTAAATGCAGTGAGGAAGATAGGTCAGCCTGGAAACACACGGGAGCT CTCAAAAAGAATATATGTGATGCAGAAAAATCTCATGAAGTGTTATTGAGCTTTGTGATA AGTGAACTATCTAAAGGAAAGTTATACCATGAAGAAGGAACTCAGGAGTGTACAATGGTT AGCCCTATTGCTTGGTCTCCCGAATCCATGGAAAAATATTTACAAGACTTCTGCTTACCT TTCCTCAGAATCACCAGCCTTCTCCAGCACCACCTTTTTGGGGAAGATTTACCTAGCTGC CAGGAAGAAGAAGAATTTTCAGTTCTTTCCAGCTGCCTGGGACTTCTTCCTACATTTTAC CAAACAGAACATCCATTCATCAGTGCCTCCTGTCTGGATTGGCCAGTTCCAGCATTTGAT ATTATATCTCAATGGTGTTTTGAGATAAATTCATTTACTGAAAGACATGCAGAACAAGGA AAGGCCTTGCTTATCCAGGAGTCAAAATGGAAATTGCCACACCTGCTACAGTTGCCTGAA AATTATAATACCATTTTCCAGTACTACCATAGAAAAACCTGTAGTGTCTGCACCAAGGTT CCTAAAGATCCTGCCGTTTGCCTTGTTTGTGGTACTTTTGTATGCCTGAAAGGACTTTGC TGCAAGCAACAAAGTTACTGTGAATGTGTATTGCATTCTCAGAACTGTGGTGCTGGAACA GGAATTTTCCTTTTGATCAATGCATCAGTGATTATCATCATTCGAGGCCACCGCTTCTGC CTCTGGGGTTCTGTGTATTTGGATGCTCATGGAGAGGAAGACCGAGATCTGAGGCGAGGC AAACCTCTCTACATTTGTAAGGAAAGATACAAGGTTCTTGAACAACAGTGGATTTCTCAT ACTTTTGATCACATCAATAAAAGATGGGGTCCGCATTACAATGGGCTGTGACTCACCACC TCAGCATTGCATTGTATCATTTTCATTAAGAATTATCAACAATAAGCTTTAACTTAATTT GGGGGAATAACGCTTTTGCCGAGGGAAAAAAAAAGAAAACATACATTATAAAGCCTTTCC AAAATTAGGTGCTTGGTAATCACATTAATGGTATAATTTTTTTTGTAAGTATCTGGAAAA CGTAACAAGTAACAAGTTAAATCATTCTTTAGTGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-101, gnl|bosTau2|chr2 (22314476-22314575) | |
| 1-101, gnl|canFam2|chr36 (17713497-17713669) | |
| 1-101, gnl|danRer3|chr17 (39454729-39454866) | |
| 1-101, gnl|dasNov1|scaffold_42863 (831-1008) | |
| 1-101, gnl|echTel1|scaffold_173786 (4124-4284) | |
| 1-101, gnl|fr1|chrUn (7181203-7181351) | |
| 1-101, gnl|galGal2|chr7 (19273864-19273701) | |
| 1-101, gnl|hg17|chr2 (170737461-170737633) | |
| 1-101, gnl|Hg17|chr2 (170737533-170737631) | |
| 1-101, gnl|loxAfr1|scaffold_22253 (42730-42555) | |
| 1-101, gnl|mm7|chr2 (69943623-69943798) | |
| 1-101, gnl|Mm7|chr2 (69943695-69943796) | |
| 1-101, gnl|monDom2|scaffold_2 (68411460-68411641) | |
| 1-101, gnl|oryCun1|scaffold_177603 (21069-20894) | |
| 1-101, gnl|panTro1|chr13 (60354087-60354259) | |
| 1-101, gnl|rheMac2|chr12 (33689236-33689408) | |
| 1-101, gnl|rn3|chr3 (52075232-52075399) | |
| 1-101, gnl|tetNig1|chr2 (11559534-11559386) | |
| 1-101, gnl|xenTro1|scaffold_65 (2515312-2515168) | |
| 179-310, gnl|bosTau2|chr2 (22321226-22321357) | |
| 179-310, gnl|canFam2|chr36 (17717430-17717578) | |
| 179-310, gnl|danRer3|chr17 (39459632-39459775) | |
| 179-310, gnl|dasNov1|scaffold_42863 (3927-4075) | |
| 179-310, gnl|echTel1|scaffold_299320 (33394-33542) | |
| 179-310, gnl|fr1|chrUn (7182894-7183041) | |
| 179-310, gnl|galGal2|chr7 (19270141-19270016) | |
| 179-310, gnl|hg17|chr2 (170743323-170743473) | |
| 179-310, gnl|Hg17|chr2 (170743336-170743469) | |
| 179-310, gnl|loxAfr1|scaffold_22253 (37187-37039) | |
| 179-310, gnl|mm7|chr2 (69946877-69947025) | |
| 179-310, gnl|Mm7|chr2 (69946890-69947020) | |
| 179-310, gnl|monDom2|scaffold_2 (68431748-68431889) | |
| 179-310, gnl|oryCun1|scaffold_177603 (13665-13517) | |
| 179-310, gnl|panTro1|chr13 (60359939-60360089) | |
| 179-310, gnl|rheMac2|chr12 (33701415-33701565) | |
| 179-310, gnl|rn3|chr3 (52080262-52080410) | |
| 179-310, gnl|tetNig1|chr2 (11557906-11557765) | |
| 482-693, gnl|bosTau2|chr2 (22326278-22326489) | |
| 482-693, gnl|canFam2|chr36 (17736254-17736389) | |
| 482-693, gnl|danRer3|chr17 (39464020-39464155) | |
| 482-693, gnl|dasNov1|scaffold_53613 (9319-9184) | |
| 482-693, gnl|echTel1|scaffold_141217 (218-353) | |
| 482-693, gnl|fr1|chrUn (7183942-7184076) | |
| 482-693, gnl|galGal2|chr7 (19267945-19267810) | |
| 482-693, gnl|hg17|chr2 (170761829-170761964) | |
| 482-693, gnl|Hg17|chr2 (170761829-170762040) | |
| 482-693, gnl|loxAfr1|scaffold_22253 (26404-26269) | |
| 482-693, gnl|mm7|chr2 (69950998-69951133) | |
| 482-693, gnl|Mm7|chr2 (69950998-69951209) | |
| 482-693, gnl|monDom2|scaffold_2 (68455535-68455670) | |
| 482-693, gnl|oryCun1|scaffold_146078 (3582-3447) | |
| 482-693, gnl|panTro1|chr13 (60378155-60378290) | |
| 482-693, gnl|rheMac2|chr12 (33726277-33726412) | |
| 482-693, gnl|rn3|chr3 (52086274-52086409) | |
| 482-693, gnl|tetNig1|chr2 (11557286-11557151) | |
| 482-693, gnl|xenTro1|scaffold_65 (2511314-2511179) | |
| 832-1176, gnl|bosTau2|chr2 (22327529-22327873) | |
| 832-1176, gnl|Hg17|chr2 (170763741-170764089) | |
| 832-1176, gnl|Mm7|chr2 (69952090-69952433) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-101, gnl|bosTau2|chr2 (22314476-22314575) | |
| 1-101, gnl|canFam2|chr36 (17713497-17713669) | |
| 1-101, gnl|danRer3|chr17 (39454729-39454866) | |
| 1-101, gnl|dasNov1|scaffold_42863 (831-1008) | |
| 1-101, gnl|echTel1|scaffold_173786 (4124-4284) | |
| 1-101, gnl|fr1|chrUn (7181203-7181351) | |
| 1-101, gnl|galGal2|chr7 (19273864-19273701) | |
| 1-101, gnl|hg17|chr2 (170737461-170737633) | |
| 1-101, gnl|Hg17|chr2 (170737533-170737631) | |
| 1-101, gnl|loxAfr1|scaffold_22253 (42730-42555) | |
| 1-101, gnl|mm7|chr2 (69943623-69943798) | |
| 1-101, gnl|Mm7|chr2 (69943695-69943796) | |
| 1-101, gnl|monDom2|scaffold_2 (68411460-68411641) | |
| 1-101, gnl|oryCun1|scaffold_177603 (21069-20894) | |
| 1-101, gnl|panTro1|chr13 (60354087-60354259) | |
| 1-101, gnl|rheMac2|chr12 (33689236-33689408) | |
| 1-101, gnl|rn3|chr3 (52075232-52075399) | |
| 1-101, gnl|tetNig1|chr2 (11559534-11559386) | |
| 1-101, gnl|xenTro1|scaffold_65 (2515312-2515168) | |
| 179-310, gnl|bosTau2|chr2 (22321226-22321357) | |
| 179-310, gnl|canFam2|chr36 (17717430-17717578) | |
| 179-310, gnl|danRer3|chr17 (39459632-39459775) | |
| 179-310, gnl|dasNov1|scaffold_42863 (3927-4075) | |
| 179-310, gnl|echTel1|scaffold_299320 (33394-33542) | |
| 179-310, gnl|fr1|chrUn (7182894-7183041) | |
| 179-310, gnl|galGal2|chr7 (19270141-19270016) | |
| 179-310, gnl|hg17|chr2 (170743323-170743473) | |
| 179-310, gnl|Hg17|chr2 (170743336-170743469) | |
| 179-310, gnl|loxAfr1|scaffold_22253 (37187-37039) | |
| 179-310, gnl|mm7|chr2 (69946877-69947025) | |
| 179-310, gnl|Mm7|chr2 (69946890-69947020) | |
| 179-310, gnl|monDom2|scaffold_2 (68431748-68431889) | |
| 179-310, gnl|oryCun1|scaffold_177603 (13665-13517) | |
| 179-310, gnl|panTro1|chr13 (60359939-60360089) | |
| 179-310, gnl|rheMac2|chr12 (33701415-33701565) | |
| 179-310, gnl|rn3|chr3 (52080262-52080410) | |
| 179-310, gnl|tetNig1|chr2 (11557906-11557765) | |
| 482-693, gnl|bosTau2|chr2 (22326278-22326489) | |
| 482-693, gnl|canFam2|chr36 (17736254-17736389) | |
| 482-693, gnl|danRer3|chr17 (39464020-39464155) | |
| 482-693, gnl|dasNov1|scaffold_53613 (9319-9184) | |
| 482-693, gnl|echTel1|scaffold_141217 (218-353) | |
| 482-693, gnl|fr1|chrUn (7183942-7184076) | |
| 482-693, gnl|galGal2|chr7 (19267945-19267810) | |
| 482-693, gnl|hg17|chr2 (170761829-170761964) | |
| 482-693, gnl|Hg17|chr2 (170761829-170762040) | |
| 482-693, gnl|loxAfr1|scaffold_22253 (26404-26269) | |
| 482-693, gnl|mm7|chr2 (69950998-69951133) | |
| 482-693, gnl|Mm7|chr2 (69950998-69951209) | |
| 482-693, gnl|monDom2|scaffold_2 (68455535-68455670) | |
| 482-693, gnl|oryCun1|scaffold_146078 (3582-3447) | |
| 482-693, gnl|panTro1|chr13 (60378155-60378290) | |
| 482-693, gnl|rheMac2|chr12 (33726277-33726412) | |
| 482-693, gnl|rn3|chr3 (52086274-52086409) | |
| 482-693, gnl|tetNig1|chr2 (11557286-11557151) | |
| 482-693, gnl|xenTro1|scaffold_65 (2511314-2511179) | |
| 832-1176, gnl|bosTau2|chr2 (22327529-22327873) | |
| 832-1176, gnl|Hg17|chr2 (170763741-170764089) | |
| 832-1176, gnl|Mm7|chr2 (69952090-69952433) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ldo (0.194005) | |
| cki (0.165235) | |
| liv (0.146284) | |
| spl (0.143184) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.194005) | |
| cki (0.165235) | |
| liv (0.146284) | |
| spl (0.143184) |