Ss1.1-rpldo0136_c19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCTTGCAGCCATAGGGGAGCCAGAAATGGCAGCTCTCCCAGGGAGTGAGCAGCT ACTGTAACTTTTTAAAATTAAGACAAAAAGCCTTGAAGAAAATGACTTTATTTTTCTAAG TGTAACCTCAGTATTTATGTAATTTGTACAGGGGCCGTGCCCCCACCCCCTCTGCCCCCT TTGGGGTAGATCTTGAGGGTGGGCCAACACAGGGGGAGGGTCTTTTACCCTGTGTCAGAG CCCACTTTCACCACCTGTATCCGGAGAGGGAGCTTTTTCAGAACTGGGCAGCTGGGGGGT GGAGTTTTATTAACCCCTTAGGTCTGCCTTCAGTAGGAACAAGCCTGCTTCTGTGATTAG GTGAAGGGGTGGGGGAAGTTTTTACGCACAGCCTAGTTAATCAAGGGGATGATTTGCCGA AGTGTTTGAGAACCTCCAAACCTCTAACCCCGGTTGCTGTCTGGCCTCAGTTTGGGGTGC CAAGGTGGAAGCCGTCTTTCTGGCTTTCACCTGGAGGTAGCTGGGGGCTTGTGGGTGGCT CACAAGATTGGGGCATGGCAAATCAGGGGCCAGAGAGTGGGGGAGCTTGGGACTCAGGTC TGTAACTGCCCAGCCCCTTTTCTCTGCTCTTGTTTCACTCCACCATCACTCACTCACTCC CTGCTCCCCCACCCTGGGGAGGAGAGCTTGATGAATTCCTCCTCTCCTTCCCACAAAAGA CAGACCCAGTGAGTGAATCAGGCAAAGTGCTTATAATGTGTGTCGTGTGAGCGTGGCCTT GGGAGAACATGCGTGCATCAGGGATGAGGTGGCATTTTTATGTGCAGCGACCCTTGGTGT TTCCCTTCCTTGGTGGCTCTGGGGTGTGTGTGTGTGCGTGCGCGCGCGCCTGAGTGAATG TGTGCGTGTGAATGTGGGGTGTGTATGTTAGTGGTTTCTACTTCCCCTGGGATGCTGACC CAGGAATAGTGGACATGGTCACAGTCCTATGTACAGAGCTTTCTTTTGTATTAAGAAAAA AATACTCTTTCAATAAATGTATCATTTTTGTGCACAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCTTGCAGCCATAGGGGAGCCAGAAATGGCAGCTCTCCCAGGGAGTGAGCAGCT ACTGTAACTTTTTAAAATTAAGACAAAAAGCCTTGAAGAAAATGACTTTATTTTTCTAAG TGTAACCTCAGTATTTATGTAATTTGTACAGGGGCCGTGCCCCCACCCCCTCTGCCCCCT TTGGGGTAGATCTTGAGGGTGGGCCAACACAGGGGGAGGGTCTTTTACCCTGTGTCAGAG CCCACTTTCACCACCTGTATCCGGAGAGGGAGCTTTTTCAGAACTGGGCAGCTGGGGGGT GGAGTTTTATTAACCCCTTAGGTCTGCCTTCAGTAGGAACAAGCCTGCTTCTGTGATTAG GTGAAGGGGTGGGGGAAGTTTTTACGCACAGCCTAGTTAATCAAGGGGATGATTTGCCGA AGTGTTTGAGAACCTCCAAACCTCTAACCCCGGTTGCTGTCTGGCCTCAGTTTGGGGTGC CAAGGTGGAAGCCGTCTTTCTGGCTTTCACCTGGAGGTAGCTGGGGGCTTGTGGGTGGCT CACAAGATTGGGGCATGGCAAATCAGGGGCCAGAGAGTGGGGGAGCTTGGGACTCAGGTC TGTAACTGCCCAGCCCCTTTTCTCTGCTCTTGTTTCACTCCACCATCACTCACTCACTCC CTGCTCCCCCACCCTGGGGAGGAGAGCTTGATGAATTCCTCCTCTCCTTCCCACAAAAGA CAGACCCAGTGAGTGAATCAGGCAAAGTGCTTATAATGTGTGTCGTGTGAGCGTGGCCTT GGGAGAACATGCGTGCATCAGGGATGAGGTGGCATTTTTATGTGCAGCGACCCTTGGTGT TTCCCTTCCTTGGTGGCTCTGGGGTGTGTGTGTGTGCGTGCGCGCGCGCCTGAGTGAATG TGTGCGTGTGAATGTGGGGTGTGTATGTTAGTGGTTTCTACTTCCCCTGGGATGCTGACC CAGGAATAGTGGACATGGTCACAGTCCTATGTACAGAGCTTTCTTTTGTATTAAGAAAAA AATACTCTTTCAATAAATGTATCATTTTTGTGCACAAAAAAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 96-370, - strand, RNAz p=0.997703 | |
| 450-761, - strand, RNAz p=0.998622 | |
| 895-1056, + strand, RNAz p=0.970423 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 96-370, - strand, RNAz p=0.997703 | |
| 450-761, - strand, RNAz p=0.998622 | |
| 895-1056, + strand, RNAz p=0.970423 |
| Predicted microRNA(s): 4 entry(ies) | More info |
| Predicted microRNA(s): 4 entry(ies) | Help | Less info |
| 144-372, + strand, RNAmicro p=0.999997 | |
| 471-665, + strand, RNAmicro p=0.99997 | |
| 243-380, - strand, RNAmicro p=0.992863 | |
| 640-783, - strand, RNAmicro p=0.99035 |
| Predicted microRNA(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 144-372, + strand, RNAmicro p=0.999997 | |
| 471-665, + strand, RNAmicro p=0.99997 | |
| 243-380, - strand, RNAmicro p=0.992863 | |
| 640-783, - strand, RNAmicro p=0.99035 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 180-159, AV593537 Bos taurus cartilage fetus Bos taurus cDNA clone (dbj|AV593537.1|), blast E-value=2e-26, identity=100% | |
| 180-159, AM035130 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb|AM035130.1|), blast E-value=4e-22, identity=100% | |
| 180-159, 289865 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF890182.1|), blast E-value=2e-26, identity=100% | |
| 180-159, 456187 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI542061.1|), blast E-value=2e-26, identity=100% | |
| 180-159, 4092586 BARC 10BOV Bos taurus cDNA clone 10BOV30_K09 5', mRNA (gb|CK953072.1|), blast E-value=2e-26, identity=100% | |
| 180-159, 1162184 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN281029.1|), blast E-value=6e-24, identity=98.44% | |
| 895-1050, AM035865 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb|AM035865.1|), blast E-value=0, identity=94.23% | |
| 895-1056, 532642 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BM480937.1|), blast E-value=0, identity=93.83% | |
| 895-1055, 4068482 BARC 10BOV Bos taurus cDNA clone 10BOV16_G03 3', mRNA (gb|CK944327.1|), blast E-value=0, identity=94.41% | |
| 895-1055, 4092202 BARC 10BOV Bos taurus cDNA clone 10BOV30_K09 3', mRNA (gb|CK952687.1|), blast E-value=0, identity=94.41% | |
| 895-1053, UMC-bend_0B01-021-c07 Day 16 Uterus from a non-pregnant animal bend (gb|CO000238.1|), blast E-value=0, identity=94.34% | |
| 895-1053, 1259797 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN519021.1|), blast E-value=0, identity=94.34% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 180-159, AV593537 Bos taurus cartilage fetus Bos taurus cDNA clone (dbj|AV593537.1|), blast E-value=2e-26, identity=100% | |
| 180-159, AM035130 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb|AM035130.1|), blast E-value=4e-22, identity=100% | |
| 180-159, 289865 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF890182.1|), blast E-value=2e-26, identity=100% | |
| 180-159, 456187 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI542061.1|), blast E-value=2e-26, identity=100% | |
| 180-159, 4092586 BARC 10BOV Bos taurus cDNA clone 10BOV30_K09 5', mRNA (gb|CK953072.1|), blast E-value=2e-26, identity=100% | |
| 180-159, 1162184 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN281029.1|), blast E-value=6e-24, identity=98.44% | |
| 895-1050, AM035865 KN-252-spleen, Bos taurus Bos taurus cDNA clone (emb|AM035865.1|), blast E-value=0, identity=94.23% | |
| 895-1056, 532642 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BM480937.1|), blast E-value=0, identity=93.83% | |
| 895-1055, 4068482 BARC 10BOV Bos taurus cDNA clone 10BOV16_G03 3', mRNA (gb|CK944327.1|), blast E-value=0, identity=94.41% | |
| 895-1055, 4092202 BARC 10BOV Bos taurus cDNA clone 10BOV30_K09 3', mRNA (gb|CK952687.1|), blast E-value=0, identity=94.41% | |
| 895-1053, UMC-bend_0B01-021-c07 Day 16 Uterus from a non-pregnant animal bend (gb|CO000238.1|), blast E-value=0, identity=94.34% | |
| 895-1053, 1259797 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN519021.1|), blast E-value=0, identity=94.34% |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_003131, + |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 18-1056, gnl|bosTau2|chr23 (13192337-13193396) | |
| 18-1056, gnl|Hg17|chr6 (43256178-43257220) | |
| 18-1056, gnl|Mm7|chr17 (44676563-44675572) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-1056, gnl|bosTau2|chr23 (13192337-13193396) | |
| 18-1056, gnl|Hg17|chr6 (43256178-43257220) | |
| 18-1056, gnl|Mm7|chr17 (44676563-44675572) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cut (0.679694) | |
| hea (0.408998) | |
| elu (0.385356) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| cki (0.165235) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.679694) | |
| hea (0.408998) | |
| elu (0.385356) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| cki (0.165235) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ldo (0.0970026) |