Non-Coding RNA Search

Ss1.1-rpldo0136_n6.5

Sequence:


               
               CGGCCTCCCTCCCGCGCCCGCTCGCTCCCGCGGCCCTCGCTCGCCTCGCGCCGGCAGTTT
TGGGCCTACACCTCCCCTCCCCCCGCCAGCCACCAAAGACTTGACCACGTAACGAGCCCA
ACTCCCCCGAACGCCGCCCGCCGCTCGCCATGGATGCCGGTGTGACTGAAAGTGGACTAA
ATGTGACTCTCACCATTCGGCTGCTTATGCACGGAAAGGAAGTAGGAAGCATTATTGGGA
AGAAAGGGGAGTCGGTTAAGAGGATCCGCGAGGAGAGTGGCGCGCGGATCAACATCTCGG
AGGGGAATTGTCCGGAGAGAATCATCACTCTGACCGGCCCCACCAATGCCATCTTTAAGG
CCTTCGCTATGATCATCGACAAGCTGGAAGAAGATATCAACAGCTCCATGACCAACAGCA
CGGCGGCCAGCAGGCCCCCGGTCACCCTGAGGCTCGTGGTGCCGGCCACCCAGTGCGGCT
CCCTGATTGGGAAAGGCGGCTGTAAGATCAAAGAGATCCGCGAGAGTACGGGGGCCCAGG
TCCAGGTGGCGGGGGATATGCTGCCCAACTCTACCGAGCGGGCCATCACCATTGCTGGCG
TGCCGCAGTCTGTCACCGAGTGTGTCAAGCAGATCTGCCTGGTCATGCTGGAGACGCTCT
CCCAGTCTCCGCAAGGGAGAGTCATGACCATTCCGTACCAGCCCATGCCGGCCAGCTCTC
CGGTCATCTGCGCGGGCGGCCAAGATCGGTGCAGCGACGCTGCGGGCTACCCTCATGCCA
CCCATGACCTGGAGGGAACACCTCTAGATGCCTACTCGATTCAAGGACAACACACCATTT
CTCCGCTCGATCTGGCCAAGCTGAACCAGGTGGCAAGACAACAGTCTCACTTTGCCATGA
TGCACGGCGGGACCGGATTCGCCGGAATTGACTCCAGCTCTCCAGAGGTGAAAGGCTATT
GGGCAAGTTTGGATGCATCTACTCAAACCACCCATGAACTCACCATTCCAAATAACTTAA
TTGGCTGCATAATCGGGCGCCAAGGCGCCAACATTAATGAGATCCGCCAGATGTCCGGGG
CCCAGATCAAAATTGCCAATCCAGTGGAAGGCTCTTCTGGTAGGCAGGTTACTATCACTG
GTTCTGCTGCCAGTATTAGTCTGGCCCAATATCTAATCAATGCCAGGCTTTCCTCTGAGA
AGGGCATGGGGTGCAGCTAGAACAGTGTAGGTTCACTCATAACCCCTTTCTGCTGTTTTC
CCATGATCCAACTGTGTAATTTCTGGTCAGTGATTCCAGGTTTTAAATAATTTGTAAGTG
TTCAGTTTCTACACAACTTTATCATCCGCTAAGAATTTAAAAATCACATTCTCTGTTCAG
CTGTTAATGCTGGGATTCATATTTAGTTTTATAAGCTTTTCCCTGTTTTTAGTTTTGTTT
TGGGTTTTTGGCTCATGAATTTTCTGTTTGTCGATAAGAAATGTAAGAGTGGAATGTTAA
TAAACTTCAGTTTAGTTCTGTAATGTCAAGAATTTAAAAATTAAAAATGGATTGGTTAAA
AAAAAAAAAAAATTTGAAAAAGCTGGGAACTACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCTCCCTCCCGCGCCCGCTCGCTCCCGCGGCCCTCGCTCGCCTCGCGCCGGCAGTTT
TGGGCCTACACCTCCCCTCCCCCCGCCAGCCACCAAAGACTTGACCACGTAACGAGCCCA
ACTCCCCCGAACGCCGCCCGCCGCTCGCCATGGATGCCGGTGTGACTGAAAGTGGACTAA
ATGTGACTCTCACCATTCGGCTGCTTATGCACGGAAAGGAAGTAGGAAGCATTATTGGGA
AGAAAGGGGAGTCGGTTAAGAGGATCCGCGAGGAGAGTGGCGCGCGGATCAACATCTCGG
AGGGGAATTGTCCGGAGAGAATCATCACTCTGACCGGCCCCACCAATGCCATCTTTAAGG
CCTTCGCTATGATCATCGACAAGCTGGAAGAAGATATCAACAGCTCCATGACCAACAGCA
CGGCGGCCAGCAGGCCCCCGGTCACCCTGAGGCTCGTGGTGCCGGCCACCCAGTGCGGCT
CCCTGATTGGGAAAGGCGGCTGTAAGATCAAAGAGATCCGCGAGAGTACGGGGGCCCAGG
TCCAGGTGGCGGGGGATATGCTGCCCAACTCTACCGAGCGGGCCATCACCATTGCTGGCG
TGCCGCAGTCTGTCACCGAGTGTGTCAAGCAGATCTGCCTGGTCATGCTGGAGACGCTCT
CCCAGTCTCCGCAAGGGAGAGTCATGACCATTCCGTACCAGCCCATGCCGGCCAGCTCTC
CGGTCATCTGCGCGGGCGGCCAAGATCGGTGCAGCGACGCTGCGGGCTACCCTCATGCCA
CCCATGACCTGGAGGGAACACCTCTAGATGCCTACTCGATTCAAGGACAACACACCATTT
CTCCGCTCGATCTGGCCAAGCTGAACCAGGTGGCAAGACAACAGTCTCACTTTGCCATGA
TGCACGGCGGGACCGGATTCGCCGGAATTGACTCCAGCTCTCCAGAGGTGAAAGGCTATT
GGGCAAGTTTGGATGCATCTACTCAAACCACCCATGAACTCACCATTCCAAATAACTTAA
TTGGCTGCATAATCGGGCGCCAAGGCGCCAACATTAATGAGATCCGCCAGATGTCCGGGG
CCCAGATCAAAATTGCCAATCCAGTGGAAGGCTCTTCTGGTAGGCAGGTTACTATCACTG
GTTCTGCTGCCAGTATTAGTCTGGCCCAATATCTAATCAATGCCAGGCTTTCCTCTGAGA
AGGGCATGGGGTGCAGCTAGAACAGTGTAGGTTCACTCATAACCCCTTTCTGCTGTTTTC
CCATGATCCAACTGTGTAATTTCTGGTCAGTGATTCCAGGTTTTAAATAATTTGTAAGTG
TTCAGTTTCTACACAACTTTATCATCCGCTAAGAATTTAAAAATCACATTCTCTGTTCAG
CTGTTAATGCTGGGATTCATATTTAGTTTTATAAGCTTTTCCCTGTTTTTAGTTTTGTTT
TGGGTTTTTGGCTCATGAATTTTCTGTTTGTCGATAAGAAATGTAAGAGTGGAATGTTAA
TAAACTTCAGTTTAGTTCTGTAATGTCAAGAATTTAAAAATTAAAAATGGATTGGTTAAA
AAAAAAAAAAAATTTGAAAAAGCTGGGAACTACTAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62751650|ref|NP_001015565.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62751650|ref|NP_001015565.1|

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

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               239-358, - strand, RNAz p=0.889988
               

               
               399-518, - strand, RNAz p=0.868238
               

               
               639-758, - strand, RNAz p=0.786662
               

               
               1079-1277, + strand, RNAz p=0.974437

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-358, - strand, RNAz p=0.889988
               

               
               399-518, - strand, RNAz p=0.868238
               

               
               639-758, - strand, RNAz p=0.786662
               

               
               1079-1277, + strand, RNAz p=0.974437

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006196, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006196, +

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               1-1596, gnl|bosTau2|chr11 (44631071-44629472)
               

               
               1-1596, gnl|Hg17|chr2 (70226378-70227980)
               

               
               1-1596, gnl|Mm7|chr6 (86601147-86599549)
               


               
               151-660, gnl|bosTau2|chr10 (24636964-24637451)
               

               
               151-660, gnl|Hg17|chr8 (75678967-75678514)
               

               
               151-660, gnl|Mm7|chrX (156994899-156995350)
               


               
               1028-1564, gnl|bosTau2|chr10 (24637902-24638452)
               

               
               1028-1564, gnl|Hg17|chr8 (75678273-75677772)
               

               
               1028-1564, gnl|Mm7|chrX (156996060-156996591)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1596, gnl|bosTau2|chr11 (44631071-44629472)
               

               
               1-1596, gnl|Hg17|chr2 (70226378-70227980)
               

               
               1-1596, gnl|Mm7|chr6 (86601147-86599549)
               


               
               151-660, gnl|bosTau2|chr10 (24636964-24637451)
               

               
               151-660, gnl|Hg17|chr8 (75678967-75678514)
               

               
               151-660, gnl|Mm7|chrX (156994899-156995350)
               


               
               1028-1564, gnl|bosTau2|chr10 (24637902-24638452)
               

               
               1028-1564, gnl|Hg17|chr8 (75678273-75677772)
               

               
               1028-1564, gnl|Mm7|chrX (156996060-156996591)

Expressed library(ies): 89 entry(ies)

More info

Expressed library(ies): 89 entry(ies)

Help | Less info


               
               cki (3.30469)
               

               
               sin (1.74948)
               

               
               pro (1.5361)
               

               
               tbr (1.3876)
               

               
               vin (1.33023)
               

               
               csk (1.26671)
               

               
               ldo (1.26103)
               

               
               ste (1.21687)
               

               
               spc (1.13366)
               

               
               ssp (1.08416)
               

               
               duo (1.03681)
               

               
               cut (1.01954)
               

               
               bla (0.994777)
               

               
               cje (0.991408)
               

               
               cst (0.980255)
               

               
               cly (0.965135)
               

               
               cmu (0.931966)
               

               
               cag (0.907167)
               

               
               bfe (0.899146)
               

               
               thg (0.887536)
               

               
               cga (0.837287)
               

               
               tes (0.831255)
               

               
               che (0.817884)
               

               
               cov (0.792917)
               

               
               elu (0.770713)
               

               
               nlu (0.766724)
               

               
               sug (0.763747)
               

               
               spl (0.715922)
               

               
               pgl (0.7109)
               

               
               gul (0.710353)
               

               
               fty (0.703359)
               

               
               ton (0.702001)
               

               
               fbs (0.701385)
               

               
               hlv (0.696282)
               

               
               rec (0.692281)
               

               
               mgp (0.692042)
               

               
               eye (0.682012)
               

               
               kid (0.648677)
               

               
               nco (0.646935)
               

               
               ova (0.645661)
               

               
               csp (0.644745)
               

               
               sme (0.610874)
               

               
               lun (0.601956)
               

               
               eru (0.60024)
               

               
               col (0.585023)
               

               
               lnt (0.569233)
               

               
               nep (0.551775)
               

               
               sag (0.548145)
               

               
               sto (0.539471)
               

               
               ute (0.531138)
               

               
               eje (0.494169)
               

               
               pan (0.471921)
               

               
               cli (0.458435)
               

               
               eli (0.455443)
               

               
               lin (0.436808)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               ebs (0.354904)
               

               
               jca (0.34188)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               ctl (0.306138)
               

               
               isp (0.300752)
               

               
               nbm (0.297974)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

Expressed library(ies): 89 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (3.30469)
               

               
               sin (1.74948)
               

               
               pro (1.5361)
               

               
               tbr (1.3876)
               

               
               vin (1.33023)
               

               
               csk (1.26671)
               

               
               ldo (1.26103)
               

               
               ste (1.21687)
               

               
               spc (1.13366)
               

               
               ssp (1.08416)
               

               
               duo (1.03681)
               

               
               cut (1.01954)
               

               
               bla (0.994777)
               

               
               cje (0.991408)
               

               
               cst (0.980255)
               

               
               cly (0.965135)
               

               
               cmu (0.931966)
               

               
               cag (0.907167)
               

               
               bfe (0.899146)
               

               
               thg (0.887536)
               

               
               cga (0.837287)
               

               
               tes (0.831255)
               

               
               che (0.817884)
               

               
               cov (0.792917)
               

               
               elu (0.770713)
               

               
               nlu (0.766724)
               

               
               sug (0.763747)
               

               
               spl (0.715922)
               

               
               pgl (0.7109)
               

               
               gul (0.710353)
               

               
               fty (0.703359)
               

               
               ton (0.702001)
               

               
               fbs (0.701385)
               

               
               hlv (0.696282)
               

               
               rec (0.692281)
               

               
               mgp (0.692042)
               

               
               eye (0.682012)
               

               
               kid (0.648677)
               

               
               nco (0.646935)
               

               
               ova (0.645661)
               

               
               csp (0.644745)
               

               
               sme (0.610874)
               

               
               lun (0.601956)
               

               
               eru (0.60024)
               

               
               col (0.585023)
               

               
               lnt (0.569233)
               

               
               nep (0.551775)
               

               
               sag (0.548145)
               

               
               sto (0.539471)
               

               
               ute (0.531138)
               

               
               eje (0.494169)
               

               
               pan (0.471921)
               

               
               cli (0.458435)
               

               
               eli (0.455443)
               

               
               lin (0.436808)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               ebs (0.354904)
               

               
               jca (0.34188)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               ctl (0.306138)
               

               
               isp (0.300752)
               

               
               nbm (0.297974)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               liv (0.292569)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               ese (0.253004)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)

	239-358, - strand, RNAz p=0.889988
	399-518, - strand, RNAz p=0.868238
	639-758, - strand, RNAz p=0.786662
	1079-1277, + strand, RNAz p=0.974437

	1-1596, gnl\|bosTau2\|chr11 (44631071-44629472)
	1-1596, gnl\|Hg17\|chr2 (70226378-70227980)
	1-1596, gnl\|Mm7\|chr6 (86601147-86599549)

	151-660, gnl\|bosTau2\|chr10 (24636964-24637451)
	151-660, gnl\|Hg17\|chr8 (75678967-75678514)
	151-660, gnl\|Mm7\|chrX (156994899-156995350)

	1028-1564, gnl\|bosTau2\|chr10 (24637902-24638452)
	1028-1564, gnl\|Hg17\|chr8 (75678273-75677772)
	1028-1564, gnl\|Mm7\|chrX (156996060-156996591)

	cki (3.30469)
	sin (1.74948)
	pro (1.5361)
	tbr (1.3876)
	vin (1.33023)
	csk (1.26671)
	ldo (1.26103)
	ste (1.21687)
	spc (1.13366)
	ssp (1.08416)
	duo (1.03681)
	cut (1.01954)
	bla (0.994777)
	cje (0.991408)
	cst (0.980255)
	cly (0.965135)
	cmu (0.931966)
	cag (0.907167)
	bfe (0.899146)
	thg (0.887536)
	cga (0.837287)
	tes (0.831255)
	che (0.817884)
	cov (0.792917)
	elu (0.770713)
	nlu (0.766724)
	sug (0.763747)
	spl (0.715922)
	pgl (0.7109)
	gul (0.710353)
	fty (0.703359)
	ton (0.702001)
	fbs (0.701385)
	hlv (0.696282)
	rec (0.692281)
	mgp (0.692042)
	eye (0.682012)
	kid (0.648677)
	nco (0.646935)
	ova (0.645661)
	csp (0.644745)
	sme (0.610874)
	lun (0.601956)
	eru (0.60024)
	col (0.585023)
	lnt (0.569233)
	nep (0.551775)
	sag (0.548145)
	sto (0.539471)
	ute (0.531138)
	eje (0.494169)
	pan (0.471921)
	cli (0.458435)
	eli (0.455443)
	lin (0.436808)
	pty (0.428143)
	nms (0.427716)
	hea (0.408998)
	aor (0.390549)
	ebs (0.354904)
	jca (0.34188)
	fhi (0.339155)
	nje (0.33184)
	ctl (0.306138)
	isp (0.300752)
	nbm (0.297974)
	fat (0.294855)
	ski (0.29347)
	liv (0.292569)
	nca (0.273748)
	pla (0.267344)
	lyg (0.266205)
	ese (0.253004)
	tra (0.246184)
	cbe (0.239234)
	med (0.232504)
	ecc (0.23007)
	ece (0.229305)
	cty (0.20816)
	fcc (0.197785)
	mgm (0.180343)
	ill (0.175593)
	mcp (0.170648)
	fco (0.157208)
	hyp (0.142837)
	nmm (0.132802)
	ret (0.128733)
	cbl (0.114797)
	jej (0.0989218)