Non-Coding RNA Search

Ss1.1-rpldo0137_f4.5

Sequence:


               
               TCCTCTGTGAGAAGTGCGGCTCTCTGGTACCTGTCTGGGAGACGCCAGAACACTCGGACT
ATCATTTTGCGTTGGAGTTGCAGAAATCCTTTTTGCAGCCCCACTCCTCAACTTCCCAGG
CTGTTCCTGCCCGATCTCCTCAAAGCAAAAGAAATCCCAAGAGCCCTTTGGCCTCCAGTC
ACAAACGCCCTAGGCCTGAGGGCATGCTGACATTAGAAACATTTTTTAAGCCATTAACAC
ACTAGAGAGCTGCCCTCAGGCTTGCTGCAGGGTTTTAATATTTGTAGCCTAGAAGGTGGA
AATATATTCATATCTCAAGGAAATTTGTAACTTTATGAAATTTTTAATAAGAAAAATAAG
CTGGTTAGATGCTGAGTTAAGGCTCCCATCTCTTTACAGGTGTGGATTCTAATCCTATTG
CTGACAGGGATGTAAAAACTTACCTTCCAGATATACAACCGTTTTGAGTTTTTGCTAGCC
TTTAGGGAAGCAGTGTCATACAGTTAAAAATGTCTGGGCCTCGAAACCCAAGAGATGTGG
TTCCAAACCTGACTCTGCCTCTTAGAATATGGCCTCGAATAAGTCACTTTCCTCACTTTC
CCTCATCTGTCAAATTAAGGTAATGCCTTAGACTACTGAAAATTAAGAAAAAGTGTTGAG
AATATGGAGTCCATTGGCCCTTCTACGTCTTGCATTTTATCTTAATGTAGAATGAGACTG
TTACTGGACCAGTTTAGGAACTCAGTTTAGTTGGGTAAGTTGTGAGTAGAACTAGATCTC
CAGGACCTTGGTTACTCTGAGTGTGATTCTGAGAAAGAGTATGAGCACCAACAGGGAACT
TGATAGAAATAGTCTCAGCCTTACCCCAACCCCAACTGAATTCGAAAAATACTGACCTAG
AAGTTATCAGCCCATCTGGTTTGTGGAGGATGGTGTCATTGCCTTAAATACAAATTTAAT
AAAAAGACAAGGACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTCTGTGAGAAGTGCGGCTCTCTGGTACCTGTCTGGGAGACGCCAGAACACTCGGACT
ATCATTTTGCGTTGGAGTTGCAGAAATCCTTTTTGCAGCCCCACTCCTCAACTTCCCAGG
CTGTTCCTGCCCGATCTCCTCAAAGCAAAAGAAATCCCAAGAGCCCTTTGGCCTCCAGTC
ACAAACGCCCTAGGCCTGAGGGCATGCTGACATTAGAAACATTTTTTAAGCCATTAACAC
ACTAGAGAGCTGCCCTCAGGCTTGCTGCAGGGTTTTAATATTTGTAGCCTAGAAGGTGGA
AATATATTCATATCTCAAGGAAATTTGTAACTTTATGAAATTTTTAATAAGAAAAATAAG
CTGGTTAGATGCTGAGTTAAGGCTCCCATCTCTTTACAGGTGTGGATTCTAATCCTATTG
CTGACAGGGATGTAAAAACTTACCTTCCAGATATACAACCGTTTTGAGTTTTTGCTAGCC
TTTAGGGAAGCAGTGTCATACAGTTAAAAATGTCTGGGCCTCGAAACCCAAGAGATGTGG
TTCCAAACCTGACTCTGCCTCTTAGAATATGGCCTCGAATAAGTCACTTTCCTCACTTTC
CCTCATCTGTCAAATTAAGGTAATGCCTTAGACTACTGAAAATTAAGAAAAAGTGTTGAG
AATATGGAGTCCATTGGCCCTTCTACGTCTTGCATTTTATCTTAATGTAGAATGAGACTG
TTACTGGACCAGTTTAGGAACTCAGTTTAGTTGGGTAAGTTGTGAGTAGAACTAGATCTC
CAGGACCTTGGTTACTCTGAGTGTGATTCTGAGAAAGAGTATGAGCACCAACAGGGAACT
TGATAGAAATAGTCTCAGCCTTACCCCAACCCCAACTGAATTCGAAAAATACTGACCTAG
AAGTTATCAGCCCATCTGGTTTGTGGAGGATGGTGTCATTGCCTTAAATACAAATTTAAT
AAAAAGACAAGGACAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               84-283, - strand, RNAz p=0.999116
               

               
               365-483, + strand, RNAz p=0.959056

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-283, - strand, RNAz p=0.999116
               

               
               365-483, + strand, RNAz p=0.959056

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               187-273, + strand, RNAmicro p=0.999867
               

               
               31-181, - strand, RNAmicro p=0.998797

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               187-273, + strand, RNAmicro p=0.999867
               

               
               31-181, - strand, RNAmicro p=0.998797

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006502, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006502, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-483, gnl|bosTau2|chr23 (16092569-16093044)
               

               
               5-483, gnl|Hg17|chr6 (43690032-43690509)
               

               
               5-483, gnl|Mm7|chr17 (44301897-44301517)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-483, gnl|bosTau2|chr23 (16092569-16093044)
               

               
               5-483, gnl|Hg17|chr6 (43690032-43690509)
               

               
               5-483, gnl|Mm7|chr17 (44301897-44301517)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               vin (0.332557)
               

               
               ret (0.257467)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ret (0.257467)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	84-283, - strand, RNAz p=0.999116
	365-483, + strand, RNAz p=0.959056

	187-273, + strand, RNAmicro p=0.999867
	31-181, - strand, RNAmicro p=0.998797

	5-483, gnl\|bosTau2\|chr23 (16092569-16093044)
	5-483, gnl\|Hg17\|chr6 (43690032-43690509)
	5-483, gnl\|Mm7\|chr17 (44301897-44301517)

	vin (0.332557)
	ret (0.257467)
	ldo (0.194005)
	sag (0.182715)
	ill (0.175593)
	sug (0.127291)
	thg (0.126791)
	cbl (0.114797)
	cty (0.10408)