Non-Coding RNA Search

Ss1.1-rpldo0138_a8.5

Sequence:


               
               CTGAAGGGTCTTCATCTCAGCCGGCGGCTTCAGAACAGCCGGCGGAGCTGCCTGCCTCAG
TGCGGGCGAACATCGAGCGTAAGCGGCAGCGGGCGCTGATGTTGCGCCAGGCCCGGCTGG
CGGCCCGGCCTTACCCAGCGACGACGGCTGCGGCTACCGGAGGCGTGGCTAATGTAAAAG
CAGCCCCAAAGATAATTGACACAGGAGGAGGCTTCATTCTGGAAGAGGAGGTAGAAGAAG
AACATGCAATTGGAAAAGTTGTTCATCAACCAGGACCTGTTATGGAATTTGATTATGTAA
TATGTGAAGAATGTGGTAAAGAATTTATGGATTCTTATCTTATGAACCACTTTGATTTGG
CAACTTGTGATAACTGCAGAGATGCTGATGATAAACACAAGCTTATAACTAAAACAGAAG
CAAAACAAGAATACCTTCTGAAAGACTGTGATTTAGAAAAAAGAGAACCAGCTCTTAAAT
TTATTGTGAAGAAGAATCCTCATCATTCGCAATGGGGTGATATGAAACTCTACTTAAAAT
TACAGATTGTAAAGAGGTCTCTTGAAGTTTGGGGTACTCAGGAAGCATTAGAAGAAGCGA
AGGCAATTCGACAGAAAAACCGAGAAAAAATGAAACAGAAGAAGTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAGGGTCTTCATCTCAGCCGGCGGCTTCAGAACAGCCGGCGGAGCTGCCTGCCTCAG
TGCGGGCGAACATCGAGCGTAAGCGGCAGCGGGCGCTGATGTTGCGCCAGGCCCGGCTGG
CGGCCCGGCCTTACCCAGCGACGACGGCTGCGGCTACCGGAGGCGTGGCTAATGTAAAAG
CAGCCCCAAAGATAATTGACACAGGAGGAGGCTTCATTCTGGAAGAGGAGGTAGAAGAAG
AACATGCAATTGGAAAAGTTGTTCATCAACCAGGACCTGTTATGGAATTTGATTATGTAA
TATGTGAAGAATGTGGTAAAGAATTTATGGATTCTTATCTTATGAACCACTTTGATTTGG
CAACTTGTGATAACTGCAGAGATGCTGATGATAAACACAAGCTTATAACTAAAACAGAAG
CAAAACAAGAATACCTTCTGAAAGACTGTGATTTAGAAAAAAGAGAACCAGCTCTTAAAT
TTATTGTGAAGAAGAATCCTCATCATTCGCAATGGGGTGATATGAAACTCTACTTAAAAT
TACAGATTGTAAAGAGGTCTCTTGAAGTTTGGGGTACTCAGGAAGCATTAGAAGAAGCGA
AGGCAATTCGACAGAAAAACCGAGAAAAAATGAAACAGAAGAAGTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5822443|pdb|1XPA|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5822443|pdb|1XPA|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               10-168, gnl|bosTau2|chr8 (32935908-32935750)
               

               
               10-168, gnl|Hg17|chr9 (97539110-97538952)
               

               
               10-168, gnl|Mm7|chr4 (46210009-46209857)
               


               
               377-563, gnl|bosTau2|chr8 (32921377-32921190)
               

               
               377-563, gnl|Hg17|chr9 (97529101-97528914)
               

               
               377-563, gnl|Mm7|chr4 (46198270-46198083)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-168, gnl|bosTau2|chr8 (32935908-32935750)
               

               
               10-168, gnl|Hg17|chr9 (97539110-97538952)
               

               
               10-168, gnl|Mm7|chr4 (46210009-46209857)
               


               
               377-563, gnl|bosTau2|chr8 (32921377-32921190)
               

               
               377-563, gnl|Hg17|chr9 (97529101-97528914)
               

               
               377-563, gnl|Mm7|chr4 (46198270-46198083)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbe (0.239234)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               mga (0.160205)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	10-168, gnl\|bosTau2\|chr8 (32935908-32935750)
	10-168, gnl\|Hg17\|chr9 (97539110-97538952)
	10-168, gnl\|Mm7\|chr4 (46210009-46209857)

	377-563, gnl\|bosTau2\|chr8 (32921377-32921190)
	377-563, gnl\|Hg17\|chr9 (97529101-97528914)
	377-563, gnl\|Mm7\|chr4 (46198270-46198083)

	cbe (0.239234)
	mga (0.160205)
	lyg (0.133103)
	bla (0.124347)
	ldo (0.0970026)