Non-Coding RNA Search

Ss1.1-rpldo0138_c4.5

Sequence:


               
               CTAGTGCAAAAGCAGGATACAATGTAAAGCAACTCTTCCGACGTGTTGCAGCAGCTCTGC
CTGGAATGGAAAGCACACAGGATAGAAGCAGAGAAGACATGATTGACATAAAACTGGAAA
AGCCTCAGGAGCAACCGGTCAGCGAAGGAGGCTGTTCCTGCTAATCCCCCGTGGCATCTT
TAGCTTTCCTCCAGAAGCTCACTGCTTTGGCCCCCTTACTCTTTCATTGACTGCAGTGTG
AATATTGGCTTGAACCTTTTCCCTTCAGTAATAACGTATTGCAATTCATCATTGCTGCCT
GTCACATGGAGATGATCTATTAGCTTCACAAGCACAAAAAAGTCAGTGTCTTCATTACTT
ATATTTTACAAAAAGCCAAATGATTCCAGCATATTCCAGTGATAACTTTAACAATTAGAT
ACATTTTCTTAACATTTTTCTTCCTTTTTAATGTTATGAGAATGTACTTCTAAATGATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGTGCAAAAGCAGGATACAATGTAAAGCAACTCTTCCGACGTGTTGCAGCAGCTCTGC
CTGGAATGGAAAGCACACAGGATAGAAGCAGAGAAGACATGATTGACATAAAACTGGAAA
AGCCTCAGGAGCAACCGGTCAGCGAAGGAGGCTGTTCCTGCTAATCCCCCGTGGCATCTT
TAGCTTTCCTCCAGAAGCTCACTGCTTTGGCCCCCTTACTCTTTCATTGACTGCAGTGTG
AATATTGGCTTGAACCTTTTCCCTTCAGTAATAACGTATTGCAATTCATCATTGCTGCCT
GTCACATGGAGATGATCTATTAGCTTCACAAGCACAAAAAAGTCAGTGTCTTCATTACTT
ATATTTTACAAAAAGCCAAATGATTCCAGCATATTCCAGTGATAACTTTAACAATTAGAT
ACATTTTCTTAACATTTTTCTTCCTTTTTAATGTTATGAGAATGTACTTCTAAATGATGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               100-480, gnl|bosTau2|chr15 (41970684-41970304)
               

               
               100-480, gnl|Hg17|chr11 (73066655-73066276)
               

               
               100-480, gnl|Mm7|chr7 (96685501-96685876)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-480, gnl|bosTau2|chr15 (41970684-41970304)
               

               
               100-480, gnl|Hg17|chr11 (73066655-73066276)
               

               
               100-480, gnl|Mm7|chr7 (96685501-96685876)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	100-480, gnl\|bosTau2\|chr15 (41970684-41970304)
	100-480, gnl\|Hg17\|chr11 (73066655-73066276)
	100-480, gnl\|Mm7\|chr7 (96685501-96685876)

	tbr (0.154178)
	lun (0.150489)
	sug (0.127291)
	ecc (0.115035)
	cbl (0.114797)
	ldo (0.0970026)