Non-Coding RNA Search

Ss1.1-rpldo0138_m2.5

Sequence:


               
               TGGAGCTCACTGTAGTAGCCAAAGAAGTGAAGAAGGCACCAGTCATCCTGGAGAAGCTGC
AGAACAGTGGTGTTCCCGAAGGCCACCCGGTGAGACTGGAGTGCCGCGTGATAGGCATGC
CTCCACCCGTGTTCTACTGGAAGAAAGACAACGAGACCATCCCTTTCACCCGAGAGAGGA
TCAGCATGCACCAGGACACAACTGGGTATGTGTGCCTCCTCATTCAGCCAGCCAAGAAAT
CAGACGCTGGATGGTACACACTGTCAGCCAAGAATGAAGCCGGCATCGTGTCGTGCACTG
CCAGGTTGGATATATACGCTCAGTGGCACCACCAGATCCCACCACCCATGTCGGTCCGGC
CCAGTGGCAGTCGCTACGGATCTCTCACCAGCAAAGGACTTGACATTTTCTCTGCTTTCT
CCTCCGTGGAAAGCACGATGGTGTATTCATGCTCTTCTCGGAGTGTAGTGGAGAGTGATG
AACTTTAAGAACGTCTGGGTGCCTGCTGGGTAAGGGGGCGGACTGCGGAGGGGGAAGGAG
GATGAGCCAGATAAGGTGGTTTCCAAGCAACTGGATTTGAGAAAGTTCCCACGCTGCCGG
ACCTGTGGCAAGGAGAGCGTTAAATCAGCTGGGACTCCTGCCATCTCAGCTGGGGGAAGA
GATGGAGGGCTGTGCCTTTTAAGGTTCCAACCAAAATGTGAGAAGACAATACAGATGAAC
CAAAGATGTCATGCAGCTGCCATCCACTGCTTTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGCTCACTGTAGTAGCCAAAGAAGTGAAGAAGGCACCAGTCATCCTGGAGAAGCTGC
AGAACAGTGGTGTTCCCGAAGGCCACCCGGTGAGACTGGAGTGCCGCGTGATAGGCATGC
CTCCACCCGTGTTCTACTGGAAGAAAGACAACGAGACCATCCCTTTCACCCGAGAGAGGA
TCAGCATGCACCAGGACACAACTGGGTATGTGTGCCTCCTCATTCAGCCAGCCAAGAAAT
CAGACGCTGGATGGTACACACTGTCAGCCAAGAATGAAGCCGGCATCGTGTCGTGCACTG
CCAGGTTGGATATATACGCTCAGTGGCACCACCAGATCCCACCACCCATGTCGGTCCGGC
CCAGTGGCAGTCGCTACGGATCTCTCACCAGCAAAGGACTTGACATTTTCTCTGCTTTCT
CCTCCGTGGAAAGCACGATGGTGTATTCATGCTCTTCTCGGAGTGTAGTGGAGAGTGATG
AACTTTAAGAACGTCTGGGTGCCTGCTGGGTAAGGGGGCGGACTGCGGAGGGGGAAGGAG
GATGAGCCAGATAAGGTGGTTTCCAAGCAACTGGATTTGAGAAAGTTCCCACGCTGCCGG
ACCTGTGGCAAGGAGAGCGTTAAATCAGCTGGGACTCCTGCCATCTCAGCTGGGGGAAGA
GATGGAGGGCTGTGCCTTTTAAGGTTCCAACCAAAATGTGAGAAGACAATACAGATGAAC
CAAAGATGTCATGCAGCTGCCATCCACTGCTTTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61828259|ref|XP_606282.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828259|ref|XP_606282.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               17-184, gnl|bosTau2|chr28 (17032617-17032450)
               

               
               17-184, gnl|Hg17|chr10 (69631403-69631757)
               

               
               17-184, gnl|Mm7|chr10 (62638983-62638816)
               


               
               318-756, gnl|bosTau2|chr28 (17026582-17026146)
               

               
               318-756, gnl|Hg17|chr10 (69640048-69640491)
               

               
               318-756, gnl|Mm7|chr10 (62635814-62635391)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-184, gnl|bosTau2|chr28 (17032617-17032450)
               

               
               17-184, gnl|Hg17|chr10 (69631403-69631757)
               

               
               17-184, gnl|Mm7|chr10 (62638983-62638816)
               


               
               318-756, gnl|bosTau2|chr28 (17026582-17026146)
               

               
               318-756, gnl|Hg17|chr10 (69640048-69640491)
               

               
               318-756, gnl|Mm7|chr10 (62635814-62635391)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.194005)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.194005)

	17-184, gnl\|bosTau2\|chr28 (17032617-17032450)
	17-184, gnl\|Hg17\|chr10 (69631403-69631757)
	17-184, gnl\|Mm7\|chr10 (62638983-62638816)

	318-756, gnl\|bosTau2\|chr28 (17026582-17026146)
	318-756, gnl\|Hg17\|chr10 (69640048-69640491)
	318-756, gnl\|Mm7\|chr10 (62635814-62635391)