Non-Coding RNA Search

Ss1.1-rpldo0139_d7.5

Sequence:


               
               ATCGTGTGTTTCCAAAATGGCGGCAGCGATGGATGTGGATACCCCGAGCGGCACCAACAG
CGGCGCGGGCAAGAAGCGCTTTGAAGTGAAAAAGTGGAATGCAGTAGCCCTCTGGGCCTG
GGATATTGTGGTTGATAACTGTGCCATCTGCAGGAACCACATTATGGATCTTTGCATAGA
GTGTCAAGCCAACCAGGCGTCGGCTACTTCTGAAGAGTGCACCGTTGCGTGGGGAGTCTG
TAACCATGCTTTTCACTTCCACTGCATCTCCCGCTGGCTCAAAACACGGCAGGTGTGTCC
GTTGGACAACAGAGAGTGGGAATTCCAAAAATATGGGCATTAGAAAAAGAGAATTCTTCC
AGCAAGCTCAACTGTTTTGTTATTCATGTAATGACTTGCCCTCGTGTTACTTAATTATAA
ATTAGATAGAACCATGTCTTTTCTGCTTTGTCTTTTCAGTTTGCTGTTCCCTTAGCCATA
TTGTATTCTGTGTCAAATAAAATCCAGTTGGATGCTAGAGCAGATGCTGTCTCTTGTGTA
TGTAAAAAAAAAAACAAAGGGGTCCTCTCTTCCAGCTTTGGAAAGCAAGGTGTTTGTTCA
CTAAAGCCGGAGCAGAACTGTCGTGCAAGCACGTCGCTTGGTCACAAGGAAGCCTGGTCC
ACAGCCTGGTTCCTGGTGGCAGTTCTGGGCAAGTCACCGCTCTGCTCTAGGCTTTCCTCT
GTAAAGTGGCTGCTGAGGATTAAATGCTATCATTTGGGTACCTAAAGAGGCTTTATAACA
CTATATAAATGTTAACTTTGTGTATAATGTGTTTCTTCTTAGTTTAGAAAACTCATCTTG
AAATAATCTTAGCTGGCAAAAGAGTGATCTGTGAACTAAAGTTGGAAATTGATGTCATTT
AAAATTGAGTTAACAGGAGAATTCGCGTTTCCTTCCCTTTTTGATTTGTTTAAAATGCCT
TGGCTGTAGAGGGAACTGCCAGTTCTAATGTTAATTCGGTGGCTGTATAGTCTTTAACTG
AGAGGCAGGGTCTTTTACTGCATTGGTTCTCAAAGTATGGTCTAAGGACTTCCGGGGATG
CCAGAAGCCCTTTGAGGAGGTTTATAAAATCCCTTTTCCAGTTGCATGACCAGCAAGGCC
AGCTCTTCTTTTTGTCCTTCAACCAAAGCAACGTACTGAAAGAAGCAGCAGCGGTGGGAA
TCCAGCTGTGTCCTATTAAGTCAGATATAAAAGAGATTTTAAAAATGTAAAACGGTGCCA
CTCCTCTAATTTTTTGTTTGAGAAAGTTACTTTTAATAAAAATATTTATGTTAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGTGTGTTTCCAAAATGGCGGCAGCGATGGATGTGGATACCCCGAGCGGCACCAACAG
CGGCGCGGGCAAGAAGCGCTTTGAAGTGAAAAAGTGGAATGCAGTAGCCCTCTGGGCCTG
GGATATTGTGGTTGATAACTGTGCCATCTGCAGGAACCACATTATGGATCTTTGCATAGA
GTGTCAAGCCAACCAGGCGTCGGCTACTTCTGAAGAGTGCACCGTTGCGTGGGGAGTCTG
TAACCATGCTTTTCACTTCCACTGCATCTCCCGCTGGCTCAAAACACGGCAGGTGTGTCC
GTTGGACAACAGAGAGTGGGAATTCCAAAAATATGGGCATTAGAAAAAGAGAATTCTTCC
AGCAAGCTCAACTGTTTTGTTATTCATGTAATGACTTGCCCTCGTGTTACTTAATTATAA
ATTAGATAGAACCATGTCTTTTCTGCTTTGTCTTTTCAGTTTGCTGTTCCCTTAGCCATA
TTGTATTCTGTGTCAAATAAAATCCAGTTGGATGCTAGAGCAGATGCTGTCTCTTGTGTA
TGTAAAAAAAAAAACAAAGGGGTCCTCTCTTCCAGCTTTGGAAAGCAAGGTGTTTGTTCA
CTAAAGCCGGAGCAGAACTGTCGTGCAAGCACGTCGCTTGGTCACAAGGAAGCCTGGTCC
ACAGCCTGGTTCCTGGTGGCAGTTCTGGGCAAGTCACCGCTCTGCTCTAGGCTTTCCTCT
GTAAAGTGGCTGCTGAGGATTAAATGCTATCATTTGGGTACCTAAAGAGGCTTTATAACA
CTATATAAATGTTAACTTTGTGTATAATGTGTTTCTTCTTAGTTTAGAAAACTCATCTTG
AAATAATCTTAGCTGGCAAAAGAGTGATCTGTGAACTAAAGTTGGAAATTGATGTCATTT
AAAATTGAGTTAACAGGAGAATTCGCGTTTCCTTCCCTTTTTGATTTGTTTAAAATGCCT
TGGCTGTAGAGGGAACTGCCAGTTCTAATGTTAATTCGGTGGCTGTATAGTCTTTAACTG
AGAGGCAGGGTCTTTTACTGCATTGGTTCTCAAAGTATGGTCTAAGGACTTCCGGGGATG
CCAGAAGCCCTTTGAGGAGGTTTATAAAATCCCTTTTCCAGTTGCATGACCAGCAAGGCC
AGCTCTTCTTTTTGTCCTTCAACCAAAGCAACGTACTGAAAGAAGCAGCAGCGGTGGGAA
TCCAGCTGTGTCCTATTAAGTCAGATATAAAAGAGATTTTAAAAATGTAAAACGGTGCCA
CTCCTCTAATTTTTTGTTTGAGAAAGTTACTTTTAATAAAAATATTTATGTTAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|9790191|ref|NP_062686.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9790191|ref|NP_062686.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               814-919, - strand, RNAz p=0.812301

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               814-919, - strand, RNAz p=0.812301

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               4-1328, gnl|bosTau2|chr4 (33363176-33361792)
               

               
               4-1328, gnl|Hg17|chr5 (79351182-79353014)
               


               
               5-297, gnl|bosTau2|chr17 (26060412-26060130)
               

               
               5-297, gnl|Hg17|chr2 (82748422-82748666)
               

               
               5-297, gnl|Mm7|chr17 (34040136-34039853)
               


               
               405-1058, gnl|bosTau2|chr25 (41117051-41116359)
               

               
               405-1058, gnl|Hg17|chr5 (79351562-79352685)
               


               
               1110-1303, gnl|bosTau2|chr20 (8337006-8337209)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1328, gnl|bosTau2|chr4 (33363176-33361792)
               

               
               4-1328, gnl|Hg17|chr5 (79351182-79353014)
               


               
               5-297, gnl|bosTau2|chr17 (26060412-26060130)
               

               
               5-297, gnl|Hg17|chr2 (82748422-82748666)
               

               
               5-297, gnl|Mm7|chr17 (34040136-34039853)
               


               
               405-1058, gnl|bosTau2|chr25 (41117051-41116359)
               

               
               405-1058, gnl|Hg17|chr5 (79351562-79352685)
               


               
               1110-1303, gnl|bosTau2|chr20 (8337006-8337209)

Expressed library(ies): 71 entry(ies)

More info

Expressed library(ies): 71 entry(ies)

Help | Less info


               
               spc (1.36039)
               

               
               cki (1.32188)
               

               
               csk (1.26671)
               

               
               cbe (1.19617)
               

               
               fat (1.17942)
               

               
               cte (1.17096)
               

               
               pro (1.02407)
               

               
               vin (0.997672)
               

               
               bfe (0.899146)
               

               
               gul (0.887942)
               

               
               cut (0.849618)
               

               
               fce (0.814775)
               

               
               ova (0.774793)
               

               
               thg (0.760746)
               

               
               bla (0.746083)
               

               
               hlv (0.696282)
               

               
               duo (0.691204)
               

               
               che (0.68157)
               

               
               mga (0.64082)
               

               
               sme (0.610874)
               

               
               ski (0.586941)
               

               
               mgm (0.541028)
               

               
               mcp (0.511945)
               

               
               cje (0.495704)
               

               
               eep (0.490256)
               

               
               pgl (0.473934)
               

               
               lun (0.451467)
               

               
               tes (0.415628)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               ebs (0.354904)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 71 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.36039)
               

               
               cki (1.32188)
               

               
               csk (1.26671)
               

               
               cbe (1.19617)
               

               
               fat (1.17942)
               

               
               cte (1.17096)
               

               
               pro (1.02407)
               

               
               vin (0.997672)
               

               
               bfe (0.899146)
               

               
               gul (0.887942)
               

               
               cut (0.849618)
               

               
               fce (0.814775)
               

               
               ova (0.774793)
               

               
               thg (0.760746)
               

               
               bla (0.746083)
               

               
               hlv (0.696282)
               

               
               duo (0.691204)
               

               
               che (0.68157)
               

               
               mga (0.64082)
               

               
               sme (0.610874)
               

               
               ski (0.586941)
               

               
               mgm (0.541028)
               

               
               mcp (0.511945)
               

               
               cje (0.495704)
               

               
               eep (0.490256)
               

               
               pgl (0.473934)
               

               
               lun (0.451467)
               

               
               tes (0.415628)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               sug (0.381874)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               ebs (0.354904)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               spl (0.286369)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	4-1328, gnl\|bosTau2\|chr4 (33363176-33361792)
	4-1328, gnl\|Hg17\|chr5 (79351182-79353014)

	5-297, gnl\|bosTau2\|chr17 (26060412-26060130)
	5-297, gnl\|Hg17\|chr2 (82748422-82748666)
	5-297, gnl\|Mm7\|chr17 (34040136-34039853)

	405-1058, gnl\|bosTau2\|chr25 (41117051-41116359)
	405-1058, gnl\|Hg17\|chr5 (79351562-79352685)

	1110-1303, gnl\|bosTau2\|chr20 (8337006-8337209)

	spc (1.36039)
	cki (1.32188)
	csk (1.26671)
	cbe (1.19617)
	fat (1.17942)
	cte (1.17096)
	pro (1.02407)
	vin (0.997672)
	bfe (0.899146)
	gul (0.887942)
	cut (0.849618)
	fce (0.814775)
	ova (0.774793)
	thg (0.760746)
	bla (0.746083)
	hlv (0.696282)
	duo (0.691204)
	che (0.68157)
	mga (0.64082)
	sme (0.610874)
	ski (0.586941)
	mgm (0.541028)
	mcp (0.511945)
	cje (0.495704)
	eep (0.490256)
	pgl (0.473934)
	lun (0.451467)
	tes (0.415628)
	elu (0.385356)
	nlu (0.383362)
	sug (0.381874)
	cmu (0.372787)
	sag (0.36543)
	ebs (0.354904)
	ton (0.351)
	fbs (0.350693)
	nco (0.323468)
	eli (0.303628)
	liv (0.292569)
	ldo (0.291008)
	spl (0.286369)
	cov (0.264306)
	ese (0.253004)
	cty (0.20816)
	hea (0.204499)
	jej (0.197844)
	fcc (0.197785)
	eje (0.197668)
	aor (0.195274)
	col (0.195008)
	nep (0.183925)
	sto (0.179824)
	fty (0.17584)
	ill (0.175593)
	nje (0.16592)
	csp (0.161186)
	fco (0.157208)
	tbr (0.154178)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	ret (0.128733)
	tra (0.123092)
	cly (0.120642)
	ecc (0.115035)