Non-Coding RNA Search

Ss1.1-rpldo0139_e23.5S

Sequence:


               
               TTTTAGTTAAATTACTTTCTCATTTAGAGATAACAATATTCTCTGAAAACTGAGTGTTGT
AGCAATTAATTTTGACATTTTCAGACAAATGGGAGCAGTTGGCATTTGTCCCAAACTGCC
TATCAGCTGTTGTTTTCCATCATTATCTAAAATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAGTTAAATTACTTTCTCATTTAGAGATAACAATATTCTCTGAAAACTGAGTGTTGT
AGCAATTAATTTTGACATTTTCAGACAAATGGGAGCAGTTGGCATTTGTCCCAAACTGCC
TATCAGCTGTTGTTTTCCATCATTATCTAAAATAAT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-156, gnl|bosTau2|chr21 (29513678-29513528)
               

               
               1-156, gnl|canFam2|chr8 (16582425-16582571)
               

               
               1-156, gnl|dasNov1|scaffold_11435 (14252-14395)
               

               
               1-156, gnl|echTel1|scaffold_173106 (5503-5367)
               

               
               1-156, gnl|galGal2|chr5 (32835765-32835899)
               

               
               1-156, gnl|hg17|chr14 (34249123-34249266)
               

               
               1-156, gnl|Hg17|chr14 (34249297-34249141)
               

               
               1-156, gnl|loxAfr1|scaffold_38269 (37700-37842)
               

               
               1-156, gnl|monDom2|scaffold_73 (3695385-3695269)
               

               
               1-156, gnl|oryCun1|scaffold_133288 (3622-3479)
               

               
               1-156, gnl|panTro1|chr15 (33408633-33408776)
               

               
               1-156, gnl|rheMac2|chr7 (97671554-97671697)
               

               
               1-156, gnl|rn3|chr6 (75205955-75206068)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-156, gnl|bosTau2|chr21 (29513678-29513528)
               

               
               1-156, gnl|canFam2|chr8 (16582425-16582571)
               

               
               1-156, gnl|dasNov1|scaffold_11435 (14252-14395)
               

               
               1-156, gnl|echTel1|scaffold_173106 (5503-5367)
               

               
               1-156, gnl|galGal2|chr5 (32835765-32835899)
               

               
               1-156, gnl|hg17|chr14 (34249123-34249266)
               

               
               1-156, gnl|Hg17|chr14 (34249297-34249141)
               

               
               1-156, gnl|loxAfr1|scaffold_38269 (37700-37842)
               

               
               1-156, gnl|monDom2|scaffold_73 (3695385-3695269)
               

               
               1-156, gnl|oryCun1|scaffold_133288 (3622-3479)
               

               
               1-156, gnl|panTro1|chr15 (33408633-33408776)
               

               
               1-156, gnl|rheMac2|chr7 (97671554-97671697)
               

               
               1-156, gnl|rn3|chr6 (75205955-75206068)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1-156, gnl\|bosTau2\|chr21 (29513678-29513528)
	1-156, gnl\|canFam2\|chr8 (16582425-16582571)
	1-156, gnl\|dasNov1\|scaffold_11435 (14252-14395)
	1-156, gnl\|echTel1\|scaffold_173106 (5503-5367)
	1-156, gnl\|galGal2\|chr5 (32835765-32835899)
	1-156, gnl\|hg17\|chr14 (34249123-34249266)
	1-156, gnl\|Hg17\|chr14 (34249297-34249141)
	1-156, gnl\|loxAfr1\|scaffold_38269 (37700-37842)
	1-156, gnl\|monDom2\|scaffold_73 (3695385-3695269)
	1-156, gnl\|oryCun1\|scaffold_133288 (3622-3479)
	1-156, gnl\|panTro1\|chr15 (33408633-33408776)
	1-156, gnl\|rheMac2\|chr7 (97671554-97671697)
	1-156, gnl\|rn3\|chr6 (75205955-75206068)